BWA-MEM2: - map medium and long reads (> 100 bp) against reference genome

Metadata

Links

• bio.tools: Bwa-mem2

EDAM Operations

• Sequence alignment

EDAM Topics

• Mapping

Observed Tool Versions

Within GTN tutorials

2.2.1+galaxy4

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• UseGalaxy.cz

2.2.1+galaxy1

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• MISSISSIPPI
• UseGalaxy.cz

2.2.1+galaxy0

• UseGalaxy.eu ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• GalaxyTrakr
• MISSISSIPPI
• UseGalaxy.cz

Relevant Tutorials

• Assembly / ERGA post-assembly QC
• Assembly / Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• Assembly / Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
• Introduction to Galaxy Analyses / NGS data logistics