Samtools fastx: extract FASTA or FASTQ from alignment files

Metadata

Servers Offering this Tool

UseGalaxy.eu (1.9+galaxy1)

This is a guess, we are not currently checking if that is actually present.

Observed Tool Versions

Within GTN tutorials

• 1.9+galaxy1
• 1.15.1+galaxy2

EDAM Operations

• operation_1812
• operation_3802
• operation_0337
• operation_3096
• operation_3695
• operation_0335
• operation_0227

EDAM Topics

• topic_3325
• topic_0102
• topic_0080
• topic_3168

Relevant Tutorials

• Assembly / Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
• Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• Sequence analysis / Removal of human reads from SARS-CoV-2 sequencing data