xcms plot chromatogram: Plots base peak intensity chromatogram (BPI) and total ion current chromatogram (TIC) from MSnbase or xcms experiment(s)
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_plot_chromatogram/xcms_plot_chromatogram/3.12.0+galaxy3
Metadata
Links
EDAM Operations
- Label-free quantification
- Validation
- Mass spectrum visualisation
- Filtering
- Chromatographic alignment
- Chromatogram visualisation
- Peak detection
EDAM Topics
Observed Tool Versions
Within GTN tutorials
3.12.0+galaxy3
3.12.0+galaxy1
3.12.0+galaxy0
Relevant Tutorials
- Metabolomics / Mass spectrometry: GC-MS analysis with the metaMS package
- Metabolomics / Mass spectrometry: LC-MS analysis
- Metabolomics / Mass spectrometry: LC-MS preprocessing with XCMS