Workflows

These workflows are associated with Functionally Assembled Terrestrial Ecosystem Simulator (FATES)

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

CLM-FATES_ ALP1 simulation (5 years)

Anne Fouilloux

Last updated Oct 11, 2021

Launch in Tutorial Mode question
License: Apache-2.0
Tests: ❌ Results: Not yet automated

flowchart TD
  0["ℹ️ Input Dataset\nInput dataset for CLM-FATES"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["ℹ️ Input Dataset\nCLM-FATES restart file"];
  style 1 stroke:#2c3143,stroke-width:4px;
  2["CTSM/FATES-EMERALD"];
  1 -->|output| 2;
  0 -->|output| 2;
  3["Extract Dataset"];
  2 -->|history_files| 3;
  debf2e31-dbea-46d5-8644-586c9731cdbe["Output\ninput dataset(s) (extracted element)"];
  3 --> debf2e31-dbea-46d5-8644-586c9731cdbe;
  style debf2e31-dbea-46d5-8644-586c9731cdbe stroke:#2c3143,stroke-width:4px;
  4["NetCDF xarray Metadata Info"];
  3 -->|output| 4;
  5["NetCDF xarray Selection"];
  3 -->|output| 5;
  4 -->|output| 5;
  6["Replace"];
  5 -->|simpleoutput| 6;
  7["Scatterplot with ggplot2"];
  6 -->|outfile| 7;

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!

Hands-on: Importing a workflow

Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.

Click on galaxy-upload Import at the top-right of the screen

Provide your workflow

Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”

Option 2: Upload the workflow file in the box labelled “Archived Workflow File”

Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure:

Video: Importing a workflow from URL