Workflows
These workflows are associated with Creating a new tutorial
To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.
MakeAFakeInput
Last updated Jan 23, 2020
Launch in Tutorial Mode
License:
None Specified, defaults to
CC-BY-4.0
Tests: ❌
Results: Not yet automated
flowchart TD 0["ℹ️ Input Dataset\nSRR891268_R1_20M.fastq.gz"]; style 0 stroke:#2c3143,stroke-width:4px; 1["ℹ️ Input Dataset\nSRR891268_R2_20M.fastq.gz"]; style 1 stroke:#2c3143,stroke-width:4px; 10["Unique"]; 9 -->|out_file1| 10; 11["Text transformation"]; 10 -->|outfile| 11; 12["Concatenate datasets"]; 6 -->|out_file1| 12; 11 -->|output| 12; 13["Unique"]; 12 -->|out_file1| 13; 14["seqtk_subseq"]; 0 -->|output| 14; 13 -->|outfile| 14; 15["Text transformation"]; 13 -->|outfile| 15; 16["seqtk_subseq"]; 1 -->|output| 16; 15 -->|output| 16; 2["FASTQ to Tabular"]; 0 -->|output| 2; 3["Cutadapt"]; 0 -->|output| 3; 1 -->|output| 3; 4["Cut"]; 2 -->|output_file| 4; 5["Bowtie2"]; 3 -->|out1| 5; 3 -->|out2| 5; 6["Select random lines"]; 4 -->|output| 6; 7["BAM-to-SAM"]; 5 -->|output| 7; 8["Filter"]; 7 -->|output1| 8; 9["Cut"]; 8 -->|out_file1| 9;
Retrieve climate data from Copernicus
Last updated Jun 11, 2021
Launch in Tutorial Mode
License:
None Specified, defaults to
CC-BY-4.0
Tests: ❌
Results: Not yet automated
flowchart TD 0["ℹ️ Input Dataset\nAPI Request file"]; style 0 stroke:#2c3143,stroke-width:4px; 1["Copernicus Climate Data Store"]; 0 -->|output| 1;
Importing into Galaxy
Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!Hands-on: Importing a workflow
- Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
- Click on galaxy-upload Import at the top-right of the screen
- Provide your workflow
- Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
- Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
- Click the Import workflow button
Below is a short video demonstrating how to import a workflow from GitHub using this procedure: