Workflows
These workflows are associated with Identification of the binding sites of the Estrogen receptor
To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.
Identification Of The Binding Sites Of The Estrogen Receptor - Chip Seq
Last updated Jan 23, 2020
Launch in Tutorial Mode
License:
None Specified, defaults to
CC-BY-4.0
Tests: ❌
Results: Not yet automated
flowchart TD 0["ℹ️ Input Dataset\nInput dataset"]; style 0 stroke:#2c3143,stroke-width:4px; 1["ℹ️ Input Dataset\nInput dataset"]; style 1 stroke:#2c3143,stroke-width:4px; 2["ℹ️ Input Dataset\nInput dataset"]; style 2 stroke:#2c3143,stroke-width:4px; 3["ℹ️ Input Dataset\nInput dataset"]; style 3 stroke:#2c3143,stroke-width:4px; 4["ℹ️ Input Dataset\nInput dataset"]; style 4 stroke:#2c3143,stroke-width:4px; 5["ℹ️ Input Dataset\nInput dataset"]; style 5 stroke:#2c3143,stroke-width:4px; 6["ℹ️ Input Dataset\nInput dataset"]; style 6 stroke:#2c3143,stroke-width:4px; 7["ℹ️ Input Dataset\nInput dataset"]; style 7 stroke:#2c3143,stroke-width:4px; 8["ℹ️ Input Dataset\nInput dataset"]; style 8 stroke:#2c3143,stroke-width:4px; 9["IdxStats"]; 0 -->|output| 9; 10["bamCoverage"]; 0 -->|output| 10; 11["bamCoverage"]; 0 -->|output| 11; 12["plotFingerprint"]; 4 -->|output| 12; 0 -->|output| 12; 13["computeGCBias"]; 4 -->|output| 13; 14["IdxStats"]; 4 -->|output| 14; 15["bamCoverage"]; 4 -->|output| 15; 16["bamCoverage"]; 4 -->|output| 16; 17["bamCompare"]; 0 -->|output| 17; 4 -->|output| 17; 18["bamCompare"]; 0 -->|output| 18; 4 -->|output| 18; 19["MACS2 callpeak"]; 4 -->|output| 19; 0 -->|output| 19; 20["multiBamSummary"]; 7 -->|output| 20; 6 -->|output| 20; 5 -->|output| 20; 4 -->|output| 20; 3 -->|output| 20; 2 -->|output| 20; 1 -->|output| 20; 0 -->|output| 20; 21["computeMatrix"]; 18 -->|outFileName| 21; 8 -->|output| 21; 22["computeMatrix"]; 18 -->|outFileName| 22; 8 -->|output| 22; 23["plotCorrelation"]; 20 -->|outFile| 23; 24["plotHeatmap"]; 21 -->|outFileName| 24; 25["plotHeatmap"]; 22 -->|outFileName| 25;
Identification Of The Binding Sites Of The Estrogen Receptor - Qc Mapping
Last updated Jan 23, 2020
Launch in Tutorial Mode
License:
None Specified, defaults to
CC-BY-4.0
Tests: ❌
Results: Not yet automated
flowchart TD 0["ℹ️ Input Dataset\nInput dataset"]; style 0 stroke:#2c3143,stroke-width:4px; 1["FastQC"]; 0 -->|output| 1; 2["Trim Galore!"]; 0 -->|output| 2; 3["Bowtie2"]; 2 -->|trimmed_reads_single| 3; 4["BAM-to-SAM"]; 3 -->|output| 4;
Importing into Galaxy
Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!Hands-on: Importing a workflow
- Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
- Click on galaxy-upload Import at the top-right of the screen
- Provide your workflow
- Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
- Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
- Click the Import workflow button
Below is a short video demonstrating how to import a workflow from GitHub using this procedure:
Video: Importing a workflow from URL