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Intro to DataPLANT ARCs

Contributors

last_modification Published: Oct 24, 2024
last_modification Last Updated: Oct 28, 2024

About DataPLANT

DataPLANT: participate in a thriving PLANT data research community, document and publish your research data FAIR, ensure the reproducibility of your research

Towards democratization of plant research.

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About DataPLANT

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.footnote[ nfdi4plants.org] Speaker Notes


Data Stewardship between DataPLANT and communities

images showing the interplay between dataplant on one hand, and research communities on the other

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Annotated Research Context (ARC)

concept of an ARC, experimental data, computation and annotation bundled together

Your entire investigation in a single unified bag

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What does an ARC look like?

basic folder structure of an arc

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ARCs store experimental data

arc folder structure highlighting the studies and assays folder as places for storing experimental data

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Computations can be run inside ARCs

arc folder structure highlighting the workflows and runs folders for computational data

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ARCs come with comprehensive metadata

arc structure with the metadata files highlighted

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ARC builds on standards

.pull-left[ arc structure highlighting places where standards such as isa, cwl and ro-crates come into play ]

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ARC incorporate established standards

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You can store ARCs in the DataHUB

image of your local computer, connected to datahub for online storage and backup

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ARCs are versioned

image showing different versions of an arc on datahub

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You can invite collaborators

images showing different people having access to an arc

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Collaborate and Contribute

images showing you you having access to multiple ARCs

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Reuse data in ARCs

image depicting parts of one arc being re-used in another

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Publish your ARC

an arc being published and receiving a doi. arcs can be published to dataplant, or to third party repositories

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Publish your ARC, get a DOI

image showing an arc being referenced by doi in a manuscript

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Moving from paper to data publications

image showing move from classical publication to a more data-centric publishing model

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ARC ecosystem

image depicting the circular RDM research cycle, with around its edge various dataplant tools and services

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Thank you!

This material is the result of a collaborative work. Thanks to the Galaxy Training Network and all the contributors! page logo Tutorial Content is licensed under Creative Commons Attribution 4.0 International License.