Workflows

These workflows are associated with Statistical analysis of DIA data

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

flowchart TD
  0["ℹ️ Input Dataset\nPyProphet export tabular"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["ℹ️ Input Dataset\nComparison matrix"];
  style 1 stroke:#2c3143,stroke-width:4px;
  2["ℹ️ Input Dataset\nSample annot MSstats"];
  style 2 stroke:#2c3143,stroke-width:4px;
  3["MSstats"];
  1 -->|output| 3;
  2 -->|output| 3;
  0 -->|output| 3;
  4["Select"];
  3 -->|comparison_result| 4;
  0de65b2c-f62c-4068-8ac0-466e419d495b["Output\nSelect_Ecoli"];
  4 --> 0de65b2c-f62c-4068-8ac0-466e419d495b;
  style 0de65b2c-f62c-4068-8ac0-466e419d495b stroke:#2c3143,stroke-width:4px;
  5["Filter"];
  4 -->|out_file1| 5;
  197e8a45-392f-4981-8684-2c8326af4528["Output\nFilter_Ecoli"];
  5 --> 197e8a45-392f-4981-8684-2c8326af4528;
  style 197e8a45-392f-4981-8684-2c8326af4528 stroke:#2c3143,stroke-width:4px;
  6["Histogram"];
  5 -->|out_file1| 6;
  04c6287d-fd0d-4780-99b6-cf52ee18e06f["Output\nHistogram_Ecoli"];
  6 --> 04c6287d-fd0d-4780-99b6-cf52ee18e06f;
  style 04c6287d-fd0d-4780-99b6-cf52ee18e06f stroke:#2c3143,stroke-width:4px;
	

flowchart TD
  0["ℹ️ Input Dataset\nPyProphet MSstats input"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["ℹ️ Input Dataset\nComparison matrix"];
  style 1 stroke:#2c3143,stroke-width:4px;
  2["MSstats"];
  1 -->|output| 2;
  0 -->|output| 2;
  3["Select"];
  2 -->|comparison_result| 3;
  6e8589bd-13fd-4a97-a9c3-ea0a5a0e2326["Output\nSelect_Ecoli"];
  3 --> 6e8589bd-13fd-4a97-a9c3-ea0a5a0e2326;
  style 6e8589bd-13fd-4a97-a9c3-ea0a5a0e2326 stroke:#2c3143,stroke-width:4px;
  4["Filter"];
  3 -->|out_file1| 4;
  6997a43a-a17b-418b-bb6d-7d32a6c277ae["Output\nFilter_Ecoli"];
  4 --> 6997a43a-a17b-418b-bb6d-7d32a6c277ae;
  style 6997a43a-a17b-418b-bb6d-7d32a6c277ae stroke:#2c3143,stroke-width:4px;
  5["Histogram"];
  4 -->|out_file1| 5;
  cf3abac3-8227-4af8-a551-6aeae154a0e4["Output\nHistogram_Ecoli"];
  5 --> cf3abac3-8227-4af8-a551-6aeae154a0e4;
  style cf3abac3-8227-4af8-a551-6aeae154a0e4 stroke:#2c3143,stroke-width:4px;
	

Importing into Galaxy

Hands-on: Importing a workflow

• Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
• Click on galaxy-upload Import at the top-right of the screen
• Provide your workflow
  • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
  • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
• Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure: