GLEAM Multimodal Learner - HANCOCK recurrence prediction

statistics-multimodal_learner/main-workflow

Author(s)
Paulo Cilas Morais Lyra Junior, Junhao Qiu, Khai Dang, Alyssa Pybus, Jeremy Goecks
Version
1
Last updated
Mar 25, 2026
License
AGPL-3.0-or-later
Tags
statistics
multimodal
Machine Learning
GLEAM

Features
Tutorial
Gleam Multimodal Learner - Head and Neck cancer Recurrence Prediction with HANCOCK
Workflow Testing
Tests: ✅
Results: Not yet automated
FAIRness PURL
https://gxy.io/GTN:W00378
RO-Crate logo with flask Download Workflow RO-Crate Workflowhub cloud with gears logo View on WorkflowHub
Launch in Tutorial Mode
Download 
flowchart TD
  0["ℹ️ Input Dataset\nHANCOCK Train split"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["ℹ️ Input Dataset\nHANCOCK Test split"];
  style 1 stroke:#2c3143,stroke-width:4px;
  2["ℹ️ Input Dataset\nZIP archive containing CD3/CD8 images"];
  style 2 stroke:#2c3143,stroke-width:4px;
  3["Multimodal Learner"];
  0 -->|output| 3;
  1 -->|output| 3;
  2 -->|output| 3;

Inputs

Input Label
Input dataset HANCOCK Train split
Input dataset HANCOCK Test split
Input dataset ZIP archive containing CD3/CD8 images

Outputs

From Output Label

Tools

Tool Links
toolshed.g2.bx.psu.edu/repos/goeckslab/multimodal_learner/multimodal_learner/0.1.5 View in ToolShed

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands On: Importing a workflow
  1. Click on Workflows in the Galaxy activity bar (on the left side of the screen, or in the top menu bar of older Galaxy instances). You will see a list of all your workflows
  2. Click on Import at the top-right of the screen
  3. Provide your workflow
    • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
    • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
  4. Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure:

Video: Importing a workflow from URL

Version History

Version Commit Time Comments
3 44bcdbf34 2026-02-20 01:28:58 fix: invalid JSON
2 05f07020d 2026-02-20 01:21:19 workflow tags
1 d94b4ccff 2026-02-20 01:10:58 workflow and zenodo update

For Admins

Installing the workflow tools

wget https://training.galaxyproject.org/training-material/topics/statistics/tutorials/multimodal_learner/workflows/main_workflow.ga -O workflow.ga
workflow-to-tools -w workflow.ga -o tools.yaml
shed-tools install -g GALAXY -a API_KEY -t tools.yaml
workflow-install -g GALAXY -a API_KEY -w workflow.ga --publish-workflows