HISAT2: A fast and sensitive alignment program

Metadata

Links

• bio.tools: HISAT2

EDAM Operations

• Sequence alignment

EDAM Topics

• RNA-Seq

Observed Tool Versions

Within GTN tutorials

2.2.1+galaxy1

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• MISSISSIPPI
• UseGalaxy.be
• UseGalaxy.cz
• UseGalaxy.no

2.2.1+galaxy0

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• UseGalaxy.no

2.1.0+galaxy5

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• Galaxy@AuBi
• GalaxyTrakr
• MISSISSIPPI
• UseGalaxy.be
• UseGalaxy.no

2.1.0+galaxy3

• UseGalaxy.eu ⭐️
• UseGalaxy.org (Main) ⭐️
• Galaxy@AuBi
• UseGalaxy.be

2.0.3

• UseGalaxy.eu ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.be

Relevant Tutorials

• Proteomics / Proteogenomics 1: Database Creation
• Transcriptomics / De novo transcriptome reconstruction with RNA-Seq
• Transcriptomics / Pathway analysis with the MINERVA Platform
• Transcriptomics / 1: RNA-Seq reads to counts
• Transcriptomics / Differential abundance testing of small RNAs