Pratik Jagtap

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Topic: Proteomics

Tutorials

• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short) ✍️
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data ✍️
• Proteomics / Neoantigen 5b: IEDB binding PepQuery Validated Neopeptides 📝
• Proteomics / Proteogenomics 2: Database Search ✍️
• Proteomics / Proteogenomics 3: Novel peptide analysis ✍️
• Proteomics / metaQuantome 3: Taxonomy ✍️
• Proteomics / Neoantigen 1a: Fusion-Database-Generation 📝
• Proteomics / Neoantigen 2: Database merge and FragPipe discovery 📝
• Proteomics / Clinical Metaproteomics 2: Discovery 📝
• Proteomics / Proteogenomics 1: Database Creation ✍️
• Proteomics / Neoantigen 5a: Predicting HLA Binding 📝
• Proteomics / Clinical Metaproteomics 4: Quantitation 📝
• Proteomics / Neoantigen 4: Variant Annotation 📝
• Proteomics / Neoantigen 3: PepQuery2 Verification 📝
• Proteomics / EncyclopeDIA ✍️
• Proteomics / Clinical Metaproteomics 5: Data Interpretation 📝
• Proteomics / Neoantigen 1b: Non-Reference-Database-Generation 📝
• Proteomics / Metaproteomics tutorial ✍️
• Proteomics / Clinical Metaproteomics 3: Verification 📝
• Proteomics / metaQuantome 2: Function ✍️
• Proteomics / metaQuantome 1: Data creation ✍️
• Proteomics / Clinical Metaproteomics 1: Database-Generation 📝 🧐

Slides

• Microbiome / Introduction to metatranscriptomics ✍️

Video Recordings

• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short) 🗣
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data 🗣
• Proteomics / Metaproteomics tutorial 🗣

Events

• Galaxy Training Academy 2025 🧑‍🏫
• Galaxy Training Academy 2024 🧑‍🏫

GitHub Activity

github Issues Reported

External Links

Favourite Topics

Favourite Formats