Pratik Jagtap

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Topic: Proteomics

Tutorials

• Proteomics / Neoantigen 2: Database merge and FragPipe discovery 📝 🧐
• Proteomics / Neoantigen 5a: Predicting HLA Binding 📝 🧐
• Proteomics / Neoantigen 1a: Fusion-Database-Generation 📝 🧐
• Proteomics / EncyclopeDIA ✍️
• Proteomics / Metaproteomics tutorial ✍️
• Proteomics / Clinical Metaproteomics 4: Quantitation 📝
• Proteomics / Neoantigen 5b: IEDB binding Validated Neopeptides 📝 🧐
• Proteomics / Clinical Metaproteomics 5: Data Interpretation 📝
• Proteomics / Clinical Metaproteomics 2: Discovery 📝
• Proteomics / Clinical Metaproteomics 1: Database-Generation 📝 🧐
• Proteomics / Proteogenomics 2: Database Search ✍️
• Proteomics / metaQuantome 2: Function ✍️
• Proteomics / Clinical Metaproteomics 3: Verification 📝
• Proteomics / metaQuantome 1: Data creation ✍️
• Proteomics / Proteogenomics 1: Database Creation ✍️
• Proteomics / Neoantigen 3: PepQuery2 Verification 📝 🧐
• Proteomics / Neoantigen 1b: Non-Reference-Database-Generation 📝 🧐
• Proteomics / metaQuantome 3: Taxonomy ✍️
• Proteomics / Neoantigen 4: Variant Annotation 📝 🧐
• Proteomics / Proteogenomics 3: Novel peptide analysis ✍️
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short) ✍️
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data ✍️

Slides

• Microbiome / Introduction to metatranscriptomics ✍️

Video Recordings

• Proteomics / Metaproteomics tutorial 🗣
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short) 🗣
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data 🗣

Events

• Galaxy Training Academy 2025 🧑‍🏫
• Galaxy Training Academy 2024 🧑‍🏫

GitHub Activity

github Issues Reported

External Links

Favourite Topics

Favourite Formats