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Thanks for your interest in contributing to the Galaxy project, and making it easier to enable reproducible, accessible, and transparent data-intensive science for everyone!

Galaxy Training Network



Overview of the Galaxy Training Material



Updated:   PURL: gxy.io/GTN:S00042

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Presenter notes contain extra information which might be useful if you intend to use these slides for teaching.

Press P again to switch presenter notes off

Press C to create a new window where the same presentation will be displayed. This window is linked to the main window. Changing slides on one will cause the slide to change on the other.

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Galaxy Training Network

Welcome to the Galaxy Community

There are tons of ways to help out and become a Galaxy contributor - through support, training, presentations, events, code, tools, testing, and documentation.

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Thanks for your interest in contributing to the Galaxy project, and making it easier to enable reproducible, accessible, and transparent data-intensive science for everyone!

Galaxy Training Network

Some questions

  • Are you an instructor, giving training/workshop?
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Galaxy Training Network

Some questions

  • Are you an instructor, giving training/workshop?

  • Are you using Galaxy for training?

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Galaxy Training Network

Some questions

  • Are you an instructor, giving training/workshop?

  • Are you using Galaxy for training?

  • Do you know the resources of the Galaxy Training Network?

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To make it easier to get started, we'll work you through some of the steps.

Galaxy Training Network

Galaxy Training Material

Screenshot of the website

https://training.galaxyproject.org

One website, aggregating training material covering many current research topics.

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Galaxy Training Network

Interactive learning via hands-on tutorials built around a "research story"

Screenshot with 2 web-browsers open side-by-side: one pointed at the current tutorial and the other at a Galaxy instance

Usable by individual users & instructors

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Galaxy Training Network

Developed and maintained by the community on GitHub

Screenshot of github repo

https://github.com/galaxyproject/training-material

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Galaxy Training Network

Repository structure

Training Material structure

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Galaxy Training Network

Some questions

  • Have you already contributed to a project using GitHub?
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Galaxy Training Network

Some questions

  • Have you already contributed to a project using GitHub?

  • Have you already contributed to the Galaxy Training Material?

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Galaxy Training Network

Some questions

  • Have you already contributed to a project using GitHub?

  • Have you already contributed to the Galaxy Training Material?

  • Are you using Windows?

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Don't worry if you're new to "open source", or if you're still a student -- many of our contributors are, too, and we'd be happy to provide mentorship and support if this is your first time contributing to an open-source project.

The main thing is that you are passionate about addressing common challenges in data-intensive science and that you're responsible and reliable.

Galaxy Training Network

Contributing to Training Material

Contributing topic

https://training.galaxyproject.org/topics/contributing/

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Galaxy Training Network

Contributing using GitHub

  1. Fork
  2. Clone locally
  3. Create a branch
  4. Commit changes
  5. Open a Pull-Request

Tutorials:

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Galaxy Training Network

Run the website locally

  1. Install the requirements
  2. Check the website locally on http://127.0.0.1:4000/training-material/
  3. Stop the server

Tutorial: Running the Galaxy Training material website locally

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Galaxy Training Network

Creating a new topic

  1. Define the topic
  2. Create the directory for the topic
  3. Make the templating system aware about the topic

Tutorial: Including a new topic

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Galaxy Training Network

Creating a new tutorial

  1. Define the topic (tutorial)
  2. Create the directory for the tutorial (tutorial)
  3. Add metadata
  4. Create a toy dataset
  5. Write the tutorial (tutorial)
  6. Add some technical support (tutorial)
  7. Add slides (optional) (tutorial)

Tutorial: Creating a new tutorial

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Galaxy Training Network

Running a workshop

  • Set up a Galaxy for Training (tutorial)
  • Generating PDF snapshots of the website (tutorial)
  • Good practices to run a workshop (tutorials)
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Galaxy Training Network
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Galaxy Training Network

Thank You!

This material is the result of a collaborative work. Thanks to the Galaxy Training Network and all the contributors!

Author(s) orcid logoBérénice Batut avatar Bérénice Batut
Reviewers Helena Rasche avatarSaskia Hiltemann avatarBérénice Batut avatarBjörn Grüning avatarNicola Soranzo avatarRahmot Afolabi avatarWilliam Durand avatarMartin Čech avatarWendi Bacon avatar
Galaxy Training Network

Tutorial Content is licensed under Creative Commons Attribution 4.0 International License.

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Galaxy Training Network

Welcome to the Galaxy Community

There are tons of ways to help out and become a Galaxy contributor - through support, training, presentations, events, code, tools, testing, and documentation.

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Thanks for your interest in contributing to the Galaxy project, and making it easier to enable reproducible, accessible, and transparent data-intensive science for everyone!

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