Overview of the Galaxy Training Material

name: inverse
layout: true
class: center, middle, inverse

</span></div>

</span></div>

---

# Overview of the Galaxy Training Material

<div class="contributors-line">
		
	
<ul class="text-list">
			
			<li>
				<a href="/training-material/hall-of-fame/bebatut/" class="contributor-badge contributor-bebatut"><img src="/training-material/assets/images/orcid.png" alt="orcid logo" width="36" height="36"/><img src="https://avatars.githubusercontent.com/bebatut?s=36" alt="Bérénice Batut avatar" width="36" class="avatar" />
    Bérénice Batut</a></li>
</ul>

</div>

<div class="footnote" style="bottom: 8em;">
  <i class="far fa-calendar" aria-hidden="true"></i><span class="visually-hidden">last_modification</span> Updated:   
  <i class="fas fa-fingerprint" aria-hidden="true"></i><span class="visually-hidden">purl</span><abbr title="Persistent URL">PURL</abbr>: <a href="https://gxy.io/GTN:S00042">gxy.io/GTN:S00042</a>
</div>

<div class="footnote" style="bottom: 5em;">

<i class="fas fa-file-alt" aria-hidden="true"></i><span class="visually-hidden">text-document</span><a href="slides-plain.html"> Plain-text slides</a> |

</div>

<div class="footnote" style="bottom: 2em;">
    <strong>Tip: </strong>press <kbd>P</kbd> to view the presenter notes
    | <i class="fa fa-arrows" aria-hidden="true"></i><span class="visually-hidden">arrow-keys</span> Use arrow keys to move between slides

</div>

???
Presenter notes contain extra information which might be useful if you intend to use these slides for teaching.

Press `P` again to switch presenter notes off

Press `C` to create a new window where the same presentation will be displayed.
This window is linked to the main window. Changing slides on one will cause the
slide to change on the other.

Useful when presenting.

---

### Welcome to the Galaxy Community

There are tons of ways to help out and become a Galaxy contributor - through support, training, presentations, events, code, tools, testing, and documentation.

???
Thanks for your interest in contributing to the Galaxy project, and making it easier to enable reproducible, accessible, and transparent data-intensive science for everyone!
---

### Some questions

- Are you an instructor, giving training/workshop?

- Are you using Galaxy for training?

- Do you know the resources of the Galaxy Training Network?

???
To make it easier to get started, we'll work you through some of the steps.
---
### Galaxy Training Material

.image-75[![Screenshot of the website](/training-material/topics/contributing/images/website_screenshot.png)]

https://training.galaxyproject.org

<small>
One website, aggregating training material covering many current research topics.
</small>

---
### Interactive learning via hands-on tutorials built around a "research story"

![Screenshot with 2 web-browsers open side-by-side: one pointed at the current tutorial and the other at a Galaxy instance](/training-material/topics/contributing/images/interactive_hands_on.png)

<small>
Usable by individual users & instructors
</small>

---
### Developed and maintained by the community on GitHub

.image-75[![Screenshot of github repo](/training-material/topics/contributing/images/github_screenshot.png)]

https://github.com/galaxyproject/training-material

---
### Repository structure

![Training Material structure](/training-material/topics/contributing/images/infrastructure.png)

---

### Some questions

- Have you already contributed to a project using GitHub?

- Have you already contributed to the Galaxy Training Material?

- Are you using Windows?

???
Don't worry if you're new to "open source", or if you're still a student -- many of our contributors are, too, and we'd be happy to provide mentorship and support if this is your first time contributing to an open-source project.

The main thing is that you are passionate about addressing common challenges in data-intensive science and that you're responsible and reliable.
---
### Contributing to Training Material

![Contributing topic](/training-material/topics/contributing/images/contributing_topic.png)

https://training.galaxyproject.org/topics/contributing/

---
### Contributing using GitHub

1. Fork
2. Clone locally
3. Create a branch
4. Commit changes
5. Open a Pull-Request

Tutorials:
- [Contributing with GitHub via its interface](/training-material/topics/contributing/tutorials/github-interface-contribution/tutorial.html)
- [Contributing with GitHub via command-line](/training-material/topics/contributing/tutorials/github-command-line-contribution/tutorial.html)

---
### Run the website locally

1. Install the requirements
2. Check the website locally on http://127.0.0.1:4000/training-material/
3. Stop the server

Tutorial: [Running the Galaxy Training material website locally](/training-material/topics/contributing/tutorials/running-jekyll/tutorial.html)

---
### Creating a new topic

1. Define the topic
2. Create the directory for the topic
3. Make the templating system aware about the topic

Tutorial: [Including a new topic](/training-material/topics/contributing/tutorials/create-new-topic/tutorial.html)

---
### Creating a new tutorial

1. Define the topic ([tutorial](/training-material/topics/contributing/tutorials/create-new-topic/tutorial.html))
2. Create the directory for the tutorial ([tutorial](/training-material/topics/contributing/tutorials/create-new-tutorial/tutorial.html))
3. Add metadata
4. Create a toy dataset
5. Write the tutorial ([tutorial](../create-new-tutorial-content/tutorial.html))
6. Add some technical support ([tutorial](../create-new-tutorial-technical/tutorial.html))
7. Add slides (optional) ([tutorial](../create-new-tutorial-slides/slides.html#1))

Tutorial: [Creating a new tutorial](/training-material/topics/contributing/tutorials/create-new-tutorial/tutorial.html)

---
### Running a workshop

- Set up a Galaxy for Training ([tutorial](/training-material/topics/teaching/tutorials/setup-galaxy-for-training/tutorial.html))
- Generating PDF snapshots of the website ([tutorial](/training-material/topics/contributing/tutorials/generating-pdf/tutorial.html))
- Good practices to run a workshop ([tutorials](/training-material/topics/teaching/index.html))

---

## Related tutorials

---

## Thank You!

This material is the result of a collaborative work. Thanks to the [Galaxy Training Network](https://training.galaxyproject.org) and all the contributors!

<div class="contributors-line">
		
<table class="contributions">
	
	<tr>
		<td><abbr title="These people wrote the bulk of the tutorial, they may have done the analysis, built the workflow, and wrote the text themselves.">Author(s)</abbr></td>
		<td>
			<a href="/training-material/hall-of-fame/bebatut/" class="contributor-badge contributor-bebatut"><img src="/training-material/assets/images/orcid.png" alt="orcid logo" width="36" height="36"/><img src="https://avatars.githubusercontent.com/bebatut?s=36" alt="Bérénice Batut avatar" width="36" class="avatar" />
    Bérénice Batut</a>
		</td>
	</tr>

<tr class="reviewers">
		<td><abbr title="These people reviewed this material for accuracy and correctness">Reviewers</abbr></td>
		<td>
			<a href="/training-material/hall-of-fame/hexylena/" class="contributor-badge contributor-badge-small contributor-hexylena"><img src="https://avatars.githubusercontent.com/hexylena?s=36" alt="Helena Rasche avatar" width="36" class="avatar" /></a><a href="/training-material/hall-of-fame/shiltemann/" class="contributor-badge contributor-badge-small contributor-shiltemann"><img src="https://avatars.githubusercontent.com/shiltemann?s=36" alt="Saskia Hiltemann avatar" width="36" class="avatar" /></a><a href="/training-material/hall-of-fame/bebatut/" class="contributor-badge contributor-badge-small contributor-bebatut"><img src="https://avatars.githubusercontent.com/bebatut?s=36" alt="Bérénice Batut avatar" width="36" class="avatar" /></a><a href="/training-material/hall-of-fame/bgruening/" class="contributor-badge contributor-badge-small contributor-bgruening"><img src="https://avatars.githubusercontent.com/bgruening?s=36" alt="Björn Grüning avatar" width="36" class="avatar" /></a><a href="/training-material/hall-of-fame/nsoranzo/" class="contributor-badge contributor-badge-small contributor-nsoranzo"><img src="https://avatars.githubusercontent.com/nsoranzo?s=36" alt="Nicola Soranzo avatar" width="36" class="avatar" /></a><a href="/training-material/hall-of-fame/rahmot/" class="contributor-badge contributor-badge-small contributor-rahmot"><img src="https://avatars.githubusercontent.com/rahmot?s=36" alt="Rahmot Afolabi avatar" width="36" class="avatar" /></a><a href="/training-material/hall-of-fame/willdurand/" class="contributor-badge contributor-badge-small contributor-willdurand"><img src="https://avatars.githubusercontent.com/willdurand?s=36" alt="William Durand avatar" width="36" class="avatar" /></a><a href="/training-material/hall-of-fame/martenson/" class="contributor-badge contributor-badge-small contributor-martenson"><img src="https://avatars.githubusercontent.com/martenson?s=36" alt="Martin Čech avatar" width="36" class="avatar" /></a></td>
	</tr>

</table>

</div>

</div>

Tutorial Content is licensed under <a rel="license" href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution 4.0 International License</a>.<br/>