Using IGV with Galaxy

Authors:

You can send data from your Galaxy history to IGV for viewing as follows:

Install IGV on your computer (IGV download page)
Start IGV
In recent versions of IGV, you will have to enable the port:
- In IGV, go to View > Preferences > Advanced
- Check the box Enable Port
In Galaxy, expand the dataset you would like to view in IGV
- Make sure you have set a reference genome/database correctly (dbkey) (instructions)
- Under display in IGV, click on local

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