Contributing to the Galaxy Training Material

Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (more than 7,000 in the ToolShed), it can be used by people without any computer science skills, it trains to use technology, outlining available resources and efforts that have made them accessible to researchers, it is scalable.
In 2016, the Galaxy Training Network decided to set up a new infrastructure for delivering easily Galaxy related training material. The idea was to develop something open and online based on a community effort, as always in Galaxy.

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Before you start: Designing your lessons

These tutorials will guide you on the pedagogy to create impactful training material

Lesson Slides Hands-on Recordings
Design and plan session, course, materials
Principles of learning and how they apply to training and teaching

Getting Started with the GTN

These tutorials will get you started with the basics needed to contribute to the GTN. First we will show you how you can build the GTN website on GitPod or locally, and then the basics of creating tutorials and slides.

Lesson Slides Hands-on Recordings
Preview the GTN website as you edit your training material
Creating a new tutorial
Creating content in Markdown
Creating Slides
Updating tool versions in a tutorial

Advanced GTN Materials writing

Tutorials showing you how to use some advanced GTN features in your training materials.

Lesson Slides Hands-on Recordings
Adding auto-generated video to your slides
Including a new topic
Teaching Python
Tools, Data, and Workflows for tutorials

Contributing through GitHub

How to collaborate with the GTN

Lesson Slides Hands-on Recordings
Contributing to the Galaxy Training Network with GitHub
Contributing with GitHub via its interface

Analyses using GTN data

Over the years publications about the GTN and GTN communities have been published, and used GTN (meta)data to do it. These tutorials will show you how to leverage some of the data already contained within the GTN, but beware, they generally require programming skills!

Lesson Slides Hands-on Recordings
Single Cell Publication - Data Analysis
Single Cell Publication - Data Plotting

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings
Adding Quizzes to your Tutorial
Creating Interactive Galaxy Tours
GTN Metadata
Generating PDF artefacts of the website
Overview of the Galaxy Training Material
Updating diffs in admin training
FAIR Galaxy Training Material

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Community Home Maintainer Home

Editorial Board

This material is reviewed by our Editorial Board:

orcid logoBérénice Batut avatar Bérénice Batutorcid logoBjörn Grüning avatar Björn Grüning

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

William Durand avatar William DurandPatricia Palagi avatar Patricia Palagiorcid logoJulia Jakiela avatar Julia Jakielaorcid logoDominique Green avatar Dominique GreenSimon Bray avatar Simon Brayorcid logoIrakleitos Souyioultzoglou avatar Irakleitos Souyioultzoglouorcid logoSimon Gladman avatar Simon GladmanMehmet Tekman avatar Mehmet Tekmanorcid logoKatarzyna Kamieniecka avatar Katarzyna Kamienieckaorcid logoPeter van Heusden avatar Peter van Heusdenorcid logoTeresa Müller avatar Teresa MüllerMelissa Burke avatar Melissa Burkeorcid logoVojdan Kjorveziroski avatar Vojdan Kjorveziroskiorcid logoWendi Bacon avatar Wendi Baconorcid logoSonja Filiposka avatar Sonja FiliposkaGildas Le Corguillé avatar Gildas Le CorguilléNiall Beard avatar Niall Beardorcid logoBjörn Grüning avatar Björn GrüningAllegra Via avatar Allegra Viaorcid logoFotis E. Psomopoulos avatar Fotis E. Psomopoulosorcid logoLinelle Abueg avatar Linelle Abuegorcid logoAchim Winandi avatar Achim Winandiorcid logoCarolin Leister avatar Carolin LeisterCyril Monjeaud avatar Cyril Monjeaudorcid logoAnastas Mishev avatar Anastas MishevMarie Josse avatar Marie Josseorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoLucille Delisle avatar Lucille Delisleorcid logoSaskia Hiltemann avatar Saskia HiltemannBazante Sanders avatar Bazante Sandersorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoArmin Dadras avatar Armin Dadrasorcid logoPhil Reed avatar Phil ReedDonny Vrins avatar Donny Vrinsorcid logoBérénice Batut avatar Bérénice Batutorcid logoMartin Čech avatar Martin Čechorcid logoCristóbal Gallardo avatar Cristóbal GallardoPablo Moreno avatar Pablo MorenoNils Mittler avatar Nils Mittlerorcid logoChristine Hadrossek avatar Christine Hadrossekorcid logoHelena Rasche avatar Helena RascheAndrea Bagnacani avatar Andrea Bagnacaniorcid logoMarisa Loach avatar Marisa Loachorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoBert Droesbeke avatar Bert Droesbekeorcid logoKrzysztof Poterlowicz avatar Krzysztof PoterlowiczАrnaud Gingold avatar Аrnaud GingoldMarius van den Beek avatar Marius van den Beek

Funding

These individuals or organisations provided funding support for the development of this resource