Contributing to the Galaxy Training Material

Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (more than 7,000 in the ToolShed), it can be used by people without any computer science skills, it trains to use technology, outlining available resources and efforts that have made them accessible to researchers, it is scalable.
In 2016, the Galaxy Training Network decided to set up a new infrastructure for delivering easily Galaxy related training material. The idea was to develop something open and online based on a community effort, as always in Galaxy.

Material

Before you start: Designing your lessons

These tutorials will guide you on the pedagogy to create impactful training material

Getting Started with the GTN

These tutorials will get you started with the basics needed to contribute to the GTN. First we will show you how you can build the GTN website on GitPod or locally, and then the basics of creating tutorials and slides.

Advanced GTN Materials writing

Tutorials showing you how to use some advanced GTN features in your training materials.

Contributing through GitHub

How to collaborate with the GTN

Analyses using GTN data

Over the years publications about the GTN and GTN communities have been published, and used GTN (meta)data to do it. These tutorials will show you how to leverage some of the data already contained within the GTN, but beware, they generally require programming skills!

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Bérénice Batut

Björn Grüning

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Niall Beard

William Durand

Björn Grüning

Vojdan Kjorveziroski

Pavankumar Videm

Simon Gladman

Linelle Abueg

Melissa Burke

Martin Čech

Sonja Filiposka

Gildas Le Corguillé

Lucille Delisle

Mehmet Tekman

Christine Hadrossek

Achim Winandi

Bazante Sanders

Armin Dadras

Bérénice Batut

Andrea Bagnacani

Saskia Hiltemann

Cyril Monjeaud

Julia Jakiela

Аrnaud Gingold

Fotis E. Psomopoulos

Donny Vrins

Nicola Soranzo

Marius van den Beek

Simon Bray

Irakleitos Souyioultzoglou

Katarzyna Kamieniecka

Marisa Loach

Helena Rasche

Teresa Müller

Patricia Palagi

Anthony Bretaudeau

Peter van Heusden

Cristóbal Gallardo

Marie Josse

Phil Reed

Dominique Green

Nils Mittler

Wendi Bacon

Pablo Moreno

Allegra Via

Bert Droesbeke

Anastas Mishev

Carolin Leister

Krzysztof Poterlowicz

Funding

These individuals or organisations provided funding support for the development of this resource

ELIXIR Europe

de.KCD

de.NBI

UFR

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

DASH UK

This Fellowship was funded through the ELIXIR-UK DaSH project as part of the UKRI Innovation Scholars: Data Science Training in Health and Bioscience call (DaSH). (MR/V038966/1). The project aims to embed Research Data Management (RDM) know-how into UK universities and institutes by producing and delivering training in FAIR data stewardship using ELIXIR-UK knowledge and resources.

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