ELIXIR Europe

ELIXIR, the European Life Science Infrastructure for Biological Information, was founded in 2013 as an intergovernmental organisation with the aim to consolidate life science resources across Europe.

Members

These GTN contributors have noted that they are affiliated in some way with this organisation. This list is non-exhaustive, and randomly ordered.

Former Members

These individuals have noted that they previously were affiliated in some way with this organisation. This list is non-exhaustive.

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

59 Tutorials

• Genome Annotation / Genome Annotation 💵
• Genome Annotation / Bacterial Genome Annotation 💵
• Genome Annotation / Functional annotation of protein sequences 💵
• Genome Annotation / Identification of AMR genes in an assembled bacterial genome 💵
• Genome Annotation / Genome annotation with Funannotate 💵
• Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease 💵
• Teaching and Hosting Galaxy training / Running a workshop as an instructor 💵
• Epigenetics / Hi-C analysis of Drosophila melanogaster cells using HiCExplorer 💵
• Epigenetics / Formation of the Super-Structures on the Inactive X 💵
• Epigenetics / Infinium Human Methylation BeadChip 💵
• Contributing to the Galaxy Training Material / Tools, Data, and Workflows for tutorials 💵
• Contributing to the Galaxy Training Material / Creating Interactive Galaxy Tours 💵
• Contributing to the Galaxy Training Material / Preview the GTN website as you edit your training material 💵
• Computational chemistry / High Throughput Molecular Dynamics and Analysis 💵
• Proteomics / Protein FASTA Database Handling 💵
• Proteomics / Secretome Prediction 💵
• Proteomics / Peptide and Protein ID using OpenMS tools 💵
• Proteomics / Peptide and Protein ID using SearchGUI and PeptideShaker 💵
• Proteomics / Mass spectrometry imaging: Loading and exploring MSI data 💵
• Proteomics / Detection and quantitation of N-termini (degradomics) via N-TAILS 💵
• Proteomics / Label-free versus Labelled - How to Choose Your Quantitation Method 💵
• Proteomics / Peptide and Protein Quantification via Stable Isotope Labelling (SIL) 💵
• Development in Galaxy / JavaScript plugins 💵
• Development in Galaxy / Galaxy Webhooks 💵
• Single Cell / GO Enrichment Analysis on Single-Cell RNA-Seq Data 💵
• Single Cell / Single-cell ATAC-seq standard processing with SnapATAC2 💵
• Galaxy Server administration / Galaxy Database schema 💵
• Galaxy Server administration / Customizing the look of Galaxy 💵
• Galaxy Server administration / Galaxy Installation with Ansible 💵
• Galaxy Server administration / Connecting Galaxy to a compute cluster 💵
• Galaxy Server administration / Customizing the look of Galaxy (Manual) 💵
• Microbiome / Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads 💵
• Introduction to Galaxy Analyses / Introduction to Genomics and Galaxy 💵
• Introduction to Galaxy Analyses / Galaxy Basics for genomics 💵
• Introduction to Galaxy Analyses / Galaxy Basics for everyone 💵
• Introduction to Galaxy Analyses / A short introduction to Galaxy 💵
• Introduction to Galaxy Analyses / From peaks to genes 💵
• Statistics and machine learning / Clustering in Machine Learning 💵
• Statistics and machine learning / Fine tune large protein model (ProtTrans) using HuggingFace 💵
• Statistics and machine learning / Age prediction using machine learning 💵
• Statistics and machine learning / A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy 💵
• Statistics and machine learning / Basics of machine learning 💵
• Statistics and machine learning / Regression in Machine Learning 💵
• Statistics and machine learning / Classification in Machine Learning 💵
• Statistics and machine learning / Machine learning: classification and regression 💵
• Statistics and machine learning / Introduction to deep learning 💵
• Imaging / Analyse HeLa fluorescence siRNA screen 💵
• Imaging / Introduction to Image Analysis using Galaxy 💵
• FAIR Data, Workflows, and Research / FAIR Bioimage Metadata 💵
• FAIR Data, Workflows, and Research / REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data 💵
• Metabolomics / Mass spectrometry: LC-MS analysis 💵
• Metabolomics / Mass spectrometry: LC-MS data processing 💵
• Metabolomics / Mass spectrometry imaging: Examining the spatial distribution of analytes 💵
• Using Galaxy and Managing your Data / Creating high resolution images of Galaxy Workflows 💵
• Using Galaxy and Managing your Data / Understanding Galaxy history system 💵
• Using Galaxy and Managing your Data / Automating Galaxy workflows using the command line 💵
• Introduction to Galaxy Analyses / Von Peaks zu Genen 💵
• Introduction to Galaxy Analyses / De picos a genes 💵
• Introduction to Galaxy Analyses / Dai picchi ai geni 💵

1 Slide

• Sequence analysis / Mapping 💵

1 Learning Pathway

• Building and Annotating Metagenome-Assembled Genomes (MAGs) from Metagenomics Reads 💵

6 Events

• Admin Training @ GCC 2022: Online Training Day 💵
• 2023 Galaxy Admin Training (Ghent) 💵
• Galaxy Training Academy 2025 💵
• 2025 Galaxy Admin Training (Brno) 💵
• Galaxy Training Academy 2026 💵
• Galaxy Training Academy 2024 💵

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External Links

Website: https://elixir-europe.org

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