Using Galaxy and Managing your Data
A collection of microtutorials explaining various features of the Galaxy user interface and manipulating data within Galaxy.
Requirements
Before diving into this topic, we recommend you to have a look at:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Uploading Data
These tutorials will help you get data into Galaxy, before you analyse it.
Histories
Managing your analysis histories efficiently
| Lesson | Slides | Hands-on | Recordings |
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Searching Your History
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| Understanding Galaxy history system |
Making Data Manageable
Now that you have data in Galaxy, let's make it easier to work with through collections and structured data.
| Lesson | Slides | Hands-on | Recordings |
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Group tags for complex experimental designs
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Name tags for following complex histories
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| Using dataset collections |
Workflows
Using Galaxy workflows to scale analysis
Analysing Data
Some advanced topics in data analysis.
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
| InterMine integration with Galaxy | |||
| JupyterLab in Galaxy | |||
| RStudio in Galaxy | |||
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Use Jupyter notebooks in Galaxy
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Download and free up space
Once you are done with your analyses in Galaxy, it's time to download your data and free up space.
| Lesson | Slides | Hands-on | Recordings |
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Downloading and Deleting Data in Galaxy
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| Exporting to Onedata remote |
Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
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Accessing IIIF from within Galaxy
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| Getting started with Onedata distributed storage | |||
| Submitting sequence data to ENA |
Learning Pathways
Or have a look at one of our learning pathways involving this topic. Learning pathways are sets of tutorials curated for you by community experts to form a coherent set of lessons around a topic, building up knowledge as you go. We always recommend to follow the tutorials in the order they are listed in the pathway.Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Community Resources
Community Home Maintainer HomeEditorial Board
This material is reviewed by our Editorial Board:
Jennifer Hillman-Jackson
Delphine Lariviere
Teresa Müller
Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!
Contributors
This material was contributed to by:
Ahmed Hamid Awan
Miguel Roncoroni
Lisanna Paladin
Helena Rasche
Anne Pajon
Boris Depoortere
Martin Čech
Charles Overbeck
Saskia Hiltemann
Delphine Lariviere
Anton Nekrutenko
William Durand
Cristóbal Gallardo
Mateusz Kuzak
Jon Trow
Daniela Schneider
Mehmet Tekman
Wendi Bacon
John Chilton
Bert Droesbeke
Wolfgang Maier
Yvan Le Bras
Aysam Guerler
Gildas Le Corguillé
Nicola Soranzo
Armin Dadras
Clea Siguret
Nadia Goué
Björn Grüning
Bartosz Walkowicz
Teresa Müller
Anthony Bretaudeau
Łukasz Opioła
Matthias Bernt
Laila Los
Deepti Varshney
Adelaide Rhodes
Ekaterina Polkh
Niall Beard
Marius van den Beek
Toby Hodges
Nate Coraor
Avani Khadilkar
Bérénice Batut
Enis Afgan
David López
Nic Herndon
Anup Kumar
Elizabeth Sheets
Anne Fouilloux
Dave Clements
Simon Bray
Lucille Delisle
Fotis E. Psomopoulos
Oleg Zharkov
Yo Yehudi
Simon Gladman
Pavankumar Videm
Daniela Butano
Rita Gautschy
Maria Doyle
Beatriz Serrano-Solano
Funding
These individuals or organisations provided funding support for the development of this resource
