Using Galaxy and Managing your Data
A collection of microtutorials explaining various features of the Galaxy user interface and manipulating data within Galaxy.
Requirements
Before diving into this topic, we recommend you to have a look at:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Uploading Data
These tutorials will help you get data into Galaxy, before you analyse it.
Histories
Managing your analysis histories efficiently
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
|
Searching Your History
|
|||
| Understanding Galaxy history system |
Making Data Manageable
Now that you have data in Galaxy, let's make it easier to work with through collections and structured data.
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
|
Group tags for complex experimental designs
|
|||
|
Name tags for following complex histories
|
|||
| Using dataset collections |
Workflows
Using Galaxy workflows to scale analysis
Analysing Data
Some advanced topics in data analysis.
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
| InterMine integration with Galaxy | |||
| JupyterLab in Galaxy | |||
| RStudio in Galaxy | |||
|
Use Jupyter notebooks in Galaxy
|
Download and free up space
Once you are done with your analyses in Galaxy, it's time to download your data and free up space.
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
|
Downloading and Deleting Data in Galaxy
|
|||
| Exporting to Onedata remote |
Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
|
Accessing IIIF from within Galaxy
|
|||
| Getting started with Onedata distributed storage | |||
| Submitting sequence data to ENA |
Learning Pathways
Or have a look at one of our learning pathways involving this topic. Learning pathways are sets of tutorials curated for you by community experts to form a coherent set of lessons around a topic, building up knowledge as you go. We always recommend to follow the tutorials in the order they are listed in the pathway.Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
Follow topic updates rss-feed with our RSS Feed
Community Resources
Community Home Maintainer HomeEditorial Board
This material is reviewed by our Editorial Board:
Jennifer Hillman-Jackson
Delphine Lariviere
Teresa Müller
Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!
Contributors
This material was contributed to by:
John Chilton
Bert Droesbeke
Lisanna Paladin
Nic Herndon
Wolfgang Maier
Teresa Müller
Aysam Guerler
Helena Rasche
Armin Dadras
Yvan Le Bras
Boris Depoortere
Toby Hodges
Mateusz Kuzak
Jon Trow
Ekaterina Polkh
Wendi Bacon
Niall Beard
Anne Fouilloux
Adelaide Rhodes
Charles Overbeck
William Durand
Björn Grüning
Łukasz Opioła
Laila Los
Delphine Lariviere
Pavankumar Videm
Anthony Bretaudeau
Fotis E. Psomopoulos
Anup Kumar
Bérénice Batut
Dave Clements
Enis Afgan
Bartosz Walkowicz
Marius van den Beek
Avani Khadilkar
Cristóbal Gallardo
Simon Bray
Nadia Goué
Lucille Delisle
Daniela Schneider
Martin Čech
Rita Gautschy
Yo Yehudi
Deepti Varshney
Miguel Roncoroni
Anne Pajon
Simon Gladman
Nicola Soranzo
Clea Siguret
Elizabeth Sheets
Gildas Le Corguillé
Saskia Hiltemann
Nate Coraor
Maria Doyle
Anton Nekrutenko
Ahmed Hamid Awan
Daniela Butano
Funding
These individuals or organisations provided funding support for the development of this resource
