Niall Beard
Contributions
The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
63 Tutorials
- Using Galaxy and Managing your Data / Use Jupyter notebooks in Galaxy 🧐
- Using Galaxy and Managing your Data / Extracting Workflows from Histories 🧐
- Using Galaxy and Managing your Data / Using dataset collections 🧐
- Using Galaxy and Managing your Data / Understanding Galaxy history system 🧐
- Using Galaxy and Managing your Data / Rule Based Uploader: Advanced 🧐
- Development in Galaxy / JavaScript plugins 🧐
- Development in Galaxy / Data source integration 🧐
- Development in Galaxy / Galaxy Webhooks 🧐
- Development in Galaxy / Generic plugins 🧐
- Genome Annotation / Genome Annotation 🧐
- Genome Annotation / Genome annotation with Prokka 🧐
- Assembly / Unicycler Assembly 🧐
- Assembly / An Introduction to Genome Assembly 🧐
- Assembly / Making sense of a newly assembled genome 🧐
- Assembly / De Bruijn Graph Assembly 🧐
- Introduction to Galaxy Analyses / NGS data logistics 🧐
- Introduction to Galaxy Analyses / Introduction to Genomics and Galaxy 🧐
- Introduction to Galaxy Analyses / IGV Introduction 🧐
- Introduction to Galaxy Analyses / From peaks to genes 🧐
- Introduction to Galaxy Analyses / Galaxy Basics for genomics 🧐
- Contributing to the Galaxy Training Material / Creating Interactive Galaxy Tours 🧐
- Contributing to the Galaxy Training Material / Contributing to the Galaxy Training Network with GitHub 🧐
- Contributing to the Galaxy Training Material / Creating a new tutorial 🧐
- Contributing to the Galaxy Training Material / Including a new topic 🧐
- Contributing to the Galaxy Training Material / Contributing with GitHub via its interface 🧐
- Contributing to the Galaxy Training Material / Tools, Data, and Workflows for tutorials 🧐
- Contributing to the Galaxy Training Material / Creating content in Markdown 🧐
- Contributing to the Galaxy Training Material / Generating PDF artefacts of the website 🧐
- Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease 🧐
- Variant Analysis / Mapping and molecular identification of phenotype-causing mutations 🧐
- Variant Analysis / Calling variants in diploid systems 🧐
- Variant Analysis / Calling very rare variants 🧐
- Variant Analysis / Calling variants in non-diploid systems 🧐
- Variant Analysis / Microbial Variant Calling 🧐
- Transcriptomics / Differential abundance testing of small RNAs 🧐
- Transcriptomics / Visualization of RNA-Seq results with CummeRbund 🧐
- Transcriptomics / CLIP-Seq data analysis from pre-processing to motif detection 🧐
- Transcriptomics / Reference-based RNA-Seq data analysis 🧐
- Transcriptomics / De novo transcriptome reconstruction with RNA-Seq 🧐
- Transcriptomics / Reference-based RNAseq data analysis (long) 🧐
- Proteomics / Metaproteomics tutorial 🧐
- Proteomics / Protein FASTA Database Handling 🧐
- Proteomics / Label-free versus Labelled - How to Choose Your Quantitation Method 🧐
- Proteomics / Peptide and Protein Quantification via Stable Isotope Labelling (SIL) 🧐
- Proteomics / Detection and quantitation of N-termini (degradomics) via N-TAILS 🧐
- Proteomics / Peptide and Protein ID using SearchGUI and PeptideShaker 🧐
- Proteomics / Peptide and Protein ID using OpenMS tools 🧐
- Proteomics / Secretome Prediction 🧐
- Microbiome / Analyses of metagenomics data - The global picture 🧐
- Microbiome / 16S Microbial Analysis with mothur (extended) 🧐
- Sequence analysis / Mapping 🧐
- Ecology / RAD-Seq to construct genetic maps 🧐
- Ecology / RAD-Seq Reference-based data analysis 🧐
- Ecology / RAD-Seq de-novo data analysis 🧐
- Teaching and Hosting Galaxy training / Set up a Galaxy for Training 🧐
- Galaxy Server administration / Galaxy Database schema 🧐
- Galaxy Server administration / Connecting Galaxy to a compute cluster 🧐
- Galaxy Server administration / Ansible 🧐
- Statistics and machine learning / Interval-Wise Testing for omics data 🧐
- Epigenetics / DNA Methylation data analysis 🧐
- Epigenetics / Identification of the binding sites of the Estrogen receptor 🧐
- Epigenetics / Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1) 🧐
- Epigenetics / Hi-C analysis of Drosophila melanogaster cells using HiCExplorer 🧐
24 Slides
- Development in Galaxy / Prerequisites for building software/conda packages 🧐
- Development in Galaxy / Galaxy Interactive Tours 🧐
- Development in Galaxy / Tool Shed: sharing Galaxy tools 🧐
- Development in Galaxy / Tool Dependencies and Conda 🧐
- Development in Galaxy / Visualizations: JavaScript Plugins 🧐
- Development in Galaxy / Tool development and integration into Galaxy 🧐
- Development in Galaxy / Scripting Galaxy using the API and BioBlend 🧐
- Development in Galaxy / Tool Dependencies and Containers 🧐
- Development in Galaxy / Galaxy Interactive Environments 🧐
- Development in Galaxy / Galaxy Webhooks 🧐
- Development in Galaxy / Generic plugins 🧐
- Genome Annotation / Genome annotation with Prokka 🧐
- Assembly / Unicycler Assembly 🧐
- Assembly / An Introduction to Genome Assembly 🧐
- Assembly / De Bruijn Graph Assembly 🧐
- Contributing to the Galaxy Training Material / Contributing with GitHub via command-line 🧐
- Contributing to the Galaxy Training Material / Creating Slides 🧐
- Transcriptomics / Visualization of RNA-Seq results with CummeRbund 🧐
- Sequence analysis / Mapping 🧐
- Sequence analysis / Quality Control 🧐
- Galaxy Server administration / Server: Other 🧐
- Galaxy Server administration / Docker and Galaxy 🧐
- Galaxy Server administration / Connecting Galaxy to a compute cluster 🧐
- Galaxy Server administration / User, Role, Group, Quota, and Authentication managment 🧐
Your Contributor Card
Niall Beard
63 Tutorials 24 Slides
GTN contributor since 2019-02
GitHub Activity
github Issues Reported
1 Merged Pull Requests
See all of the github Pull Requests and github Commits by Niall Beard.
Reviewed 3 PRs
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-
schema.org annotation: use Course and add more properties
template-and-tools -
Add some more JSON-LD Terms
work-in-progresstemplate-and-tools -
Added schema.org annotations for training materials