Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts
nb2workflow: Generating Galaxy Tools From Jupyter Notebooks

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks
Setting up a dev Onedata instance

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batut

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Contributors

This material was contributed to by:

Niall Beard avatar Niall Beardorcid logoWendi Bacon avatar Wendi Baconorcid logoArmin Dadras avatar Armin DadrasAssunta DeSanto avatar Assunta DeSantoDenys Savchenko avatar Denys Savchenkoorcid logoBjörn Grüning avatar Björn GrüningCyril Monjeaud avatar Cyril Monjeaudorcid logoHelena Rasche avatar Helena RascheDave B. avatar Dave B.orcid logoClemens Blank avatar Clemens Blankorcid logoPaul Zierep avatar Paul ZierepYouri Hoogstrate avatar Youri HoogstrateEstelle Ancelet avatar Estelle AnceletErik Schill avatar Erik SchillAysam Guerler avatar Aysam Guerlerorcid logoBérénice Batut avatar Bérénice Batutorcid logoAndrei Variu avatar Andrei VariuDannon Baker avatar Dannon Bakerorcid logoMartin Čech avatar Martin Čechorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoSaskia Hiltemann avatar Saskia HiltemannNitesh Turaga avatar Nitesh TuragaRoss Lazarus avatar Ross LazarusGildas Le Corguillé avatar Gildas Le CorguilléClare Sloggett avatar Clare Sloggettorcid logoNate Coraor avatar Nate Coraororcid logoNicola Soranzo avatar Nicola Soranzoorcid logoCameron Hyde avatar Cameron Hydeorcid logoCristóbal Gallardo avatar Cristóbal GallardoLain Pavot avatar Lain PavotHervé Ménager avatar Hervé MénagerSimon Bray avatar Simon BrayStéphanie Legras avatar Stéphanie Legrasorcid logoJohan Gustafsson avatar Johan GustafssonLoraine Guéguen avatar Loraine GuéguenMarie Josse avatar Marie Josseorcid logoGianmauro Cuccuru avatar Gianmauro Cuccuruorcid logoJohn Chilton avatar John Chiltonorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoAlex Ostrovsky avatar Alex OstrovskyWilliam Durand avatar William DurandMatthias Bernt avatar Matthias Berntorcid logoJohn Davis avatar John Davisorcid logoAnthony Bretaudeau avatar Anthony Bretaudeau

Funding

These individuals or organisations provided funding support for the development of this resource