Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks
Setting up a dev Onedata instance
storage

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

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Contributors

This material was contributed to by:

Assunta DeSanto avatar Assunta DeSantoLain Pavot avatar Lain PavotHervé Ménager avatar Hervé Ménagerorcid logoYvan Le Bras avatar Yvan Le BrasClare Sloggett avatar Clare Sloggettorcid logoJohn Davis avatar John DavisErik Schill avatar Erik Schillorcid logoNate Coraor avatar Nate CoraorStéphanie Legras avatar Stéphanie Legrasorcid logoGianmauro Cuccuru avatar Gianmauro CuccuruRoss Lazarus avatar Ross Lazarusorcid logoClemens Blank avatar Clemens Blankorcid logoBjörn Grüning avatar Björn Grüningorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoJohan Gustafsson avatar Johan GustafssonNitesh Turaga avatar Nitesh TuragaYouri Hoogstrate avatar Youri Hoogstrateorcid logoWendi Bacon avatar Wendi Baconorcid logoHelena Rasche avatar Helena Rascheorcid logoPaul Zierep avatar Paul ZierepDave B. avatar Dave B.Matthias Bernt avatar Matthias BerntDannon Baker avatar Dannon BakerAysam Guerler avatar Aysam Guerlerorcid logoJohn Chilton avatar John ChiltonLoraine Guéguen avatar Loraine Guéguenorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoŁukasz Opioła avatar Łukasz OpiołaGildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice BatutSimon Bray avatar Simon Brayorcid logoAnthony Bretaudeau avatar Anthony BretaudeauCyril Monjeaud avatar Cyril Monjeaudorcid logoMartin Čech avatar Martin ČechEstelle Ancelet avatar Estelle Anceletorcid logoCameron Hyde avatar Cameron HydeMarie Josse avatar Marie Josse

Funding

These individuals or organisations provided funding support for the development of this resource