Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts
nb2workflow: Generating Galaxy Tools From Jupyter Notebooks

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks
Setting up a dev Onedata instance

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batut

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Contributors

This material was contributed to by:

Loraine Guéguen avatar Loraine Guéguenorcid logoJohan Gustafsson avatar Johan GustafssonMarie Josse avatar Marie Josseorcid logoClemens Blank avatar Clemens Blankorcid logoAlex Ostrovsky avatar Alex OstrovskyNiall Beard avatar Niall Beardorcid logoAndrei Variu avatar Andrei VariuErik Schill avatar Erik SchillHervé Ménager avatar Hervé Ménagerorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoBérénice Batut avatar Bérénice Batutorcid logoPaul Zierep avatar Paul Ziereporcid logoAnthony Bretaudeau avatar Anthony BretaudeauWilliam Durand avatar William DurandLain Pavot avatar Lain PavotStéphanie Legras avatar Stéphanie Legrasorcid logoJohn Chilton avatar John Chiltonorcid logoNate Coraor avatar Nate Coraororcid logoHelena Rasche avatar Helena RascheCyril Monjeaud avatar Cyril Monjeaudorcid logoMartin Čech avatar Martin ČechDenys Savchenko avatar Denys Savchenkoorcid logoGianmauro Cuccuru avatar Gianmauro Cuccuruorcid logoSaskia Hiltemann avatar Saskia HiltemannAssunta DeSanto avatar Assunta DeSantoorcid logoYvan Le Bras avatar Yvan Le BrasNitesh Turaga avatar Nitesh TuragaSimon Bray avatar Simon Brayorcid logoWendi Bacon avatar Wendi BaconDave B. avatar Dave B.orcid logoArmin Dadras avatar Armin DadrasMatthias Bernt avatar Matthias Berntorcid logoBjörn Grüning avatar Björn Grüningorcid logoNicola Soranzo avatar Nicola SoranzoYouri Hoogstrate avatar Youri HoogstrateAysam Guerler avatar Aysam GuerlerClare Sloggett avatar Clare SloggettRoss Lazarus avatar Ross LazarusGildas Le Corguillé avatar Gildas Le Corguilléorcid logoCameron Hyde avatar Cameron HydeEstelle Ancelet avatar Estelle Anceletorcid logoJohn Davis avatar John DavisDannon Baker avatar Dannon Bakerorcid logoŁukasz Opioła avatar Łukasz Opioła

Funding

These individuals or organisations provided funding support for the development of this resource