Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks
Setting up a dev Onedata instance
storage

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batut

Contributors

This material was contributed to by:

Cyril Monjeaud avatar Cyril MonjeaudGildas Le Corguillé avatar Gildas Le Corguilléorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoSaskia Hiltemann avatar Saskia HiltemannDave B. avatar Dave B.Lain Pavot avatar Lain PavotMatthias Bernt avatar Matthias BerntAysam Guerler avatar Aysam Guerlerorcid logoClemens Blank avatar Clemens BlankNiall Beard avatar Niall BeardSimon Bray avatar Simon Brayorcid logoBérénice Batut avatar Bérénice BatutClare Sloggett avatar Clare Sloggettorcid logoBjörn Grüning avatar Björn Grüningorcid logoNicola Soranzo avatar Nicola SoranzoRoss Lazarus avatar Ross LazarusEstelle Ancelet avatar Estelle AnceletMarie Josse avatar Marie JosseDannon Baker avatar Dannon Bakerorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoJohn Davis avatar John Davisorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoHelena Rasche avatar Helena Rascheorcid logoArmin Dadras avatar Armin Dadrasorcid logoMartin Čech avatar Martin Čechorcid logoCameron Hyde avatar Cameron HydeNitesh Turaga avatar Nitesh Turagaorcid logoGianmauro Cuccuru avatar Gianmauro Cuccuruorcid logoJohn Chilton avatar John ChiltonErik Schill avatar Erik SchillStéphanie Legras avatar Stéphanie Legrasorcid logoWendi Bacon avatar Wendi BaconYouri Hoogstrate avatar Youri Hoogstrateorcid logoNate Coraor avatar Nate Coraororcid logoAlex Ostrovsky avatar Alex OstrovskyWilliam Durand avatar William DurandHervé Ménager avatar Hervé Ménagerorcid logoPaul Zierep avatar Paul ZierepLoraine Guéguen avatar Loraine Guéguenorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoJohan Gustafsson avatar Johan GustafssonAssunta DeSanto avatar Assunta DeSanto

Funding

These individuals or organisations provided funding support for the development of this resource

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de.NBI
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ELIXIR Europe
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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