Armin Dadras
Affiliations
UFRFormer Affiliations
EuroScienceGatewayContributions
The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
76 Tutorials
- Contributing to the Galaxy Training Material / Creating Interactive Galaxy Tours π§
- Contributing to the Galaxy Training Material / Preview the GTN website as you edit your training material π§
- Contributing to the Galaxy Training Material / Creating content in Markdown π§
- Contributing to the Galaxy Training Material / Tools, Data, and Workflows for tutorials π§
- Digital Humanities / Transcribing Audio and Video files with Automated Speech Recognition βοΈ π§
- Digital Humanities / OpenRefine Tutorial for researching cultural data βοΈ π§ βοΈ
- Computational chemistry / High Throughput Molecular Dynamics and Analysis π§
- Single Cell / Single-cell ATAC-seq standard processing with SnapATAC2 π§
- Single Cell / Pre-processing of Single-Cell RNA Data π§
- Single Cell / GO Enrichment Analysis on Single-Cell RNA-Seq Data π§
- Using Galaxy and Managing your Data / Automating Galaxy workflows using the command line π§
- Using Galaxy and Managing your Data / Creating high resolution images of Galaxy Workflows π§
- Using Galaxy and Managing your Data / Onedata user-owned storage π§
- Using Galaxy and Managing your Data / Getting started with Onedata distributed storage π§
- Using Galaxy and Managing your Data / Understanding Galaxy history system π§
- Using Galaxy and Managing your Data / RStudio in Galaxy π π§
- Using Galaxy and Managing your Data / Importing (uploading) data from Onedata π§
- Using Galaxy and Managing your Data / Exporting to Onedata remote π§
- Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease π§
- Imaging / Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy π§
- Epigenetics / Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1) π§
- Epigenetics / Identification of the binding sites of the Estrogen receptor π§
- Epigenetics / Formation of the Super-Structures on the Inactive X π§
- Proteomics / Detection and quantitation of N-termini (degradomics) via N-TAILS π§
- Proteomics / Mass spectrometry imaging: Loading and exploring MSI data π§
- Proteomics / Peptide and Protein Quantification via Stable Isotope Labelling (SIL) π§
- Proteomics / Protein FASTA Database Handling π§
- Proteomics / Label-free versus Labelled - How to Choose Your Quantitation Method π§
- Proteomics / Secretome Prediction π§
- Proteomics / Peptide and Protein ID using OpenMS tools π§
- Proteomics / Peptide and Protein ID using SearchGUI and PeptideShaker π§
- Microbiome / Binning of metagenomic sequencing data π§
- Teaching and Hosting Galaxy training / Running a workshop as an instructor π§
- Introduction to Galaxy Analyses / From peaks to genes π π§
- Introduction to Galaxy Analyses / NGS data logistics π π§
- Introduction to Galaxy Analyses / Introduction to the Dataverse Integration in Galaxy βοΈ π§
- Introduction to Galaxy Analyses / Galaxy Basics for genomics π π§
- Galaxy Server administration / Running Jobs on Remote Resources with Pulsar π§
- Galaxy Server administration / Galaxy Database schema π§
- Galaxy Server administration / Setting up Celery Workers for Galaxy π§
- Galaxy Server administration / Galaxy Installation with Ansible π§
- Galaxy Server administration / Galaxy Interactive Tools π§
- Galaxy Server administration / Connecting Galaxy to a compute cluster π§
- Galaxy Server administration / Galaxy Monitoring with Reports π§
- Galaxy Server administration / Customizing the look of Galaxy π§
- Galaxy Server administration / Customizing the look of Galaxy (Manual) π§
- Galaxy Server administration / Use Apptainer containers for running Galaxy jobs π§
- Galaxy Server administration / Configuring the Onedata connectors (remotes, Object Store, BYOS, BYOD) π§
- Development in Galaxy / JavaScript plugins π§
- Development in Galaxy / Galaxy Webhooks π§
- Development in Galaxy / Setting up a dev Onedata instance π§
- Transcriptomics / Visualization of RNA-Seq results with Volcano Plot π
- Transcriptomics / Reference-based RNA-Seq data analysis π§
- FAIR Data, Workflows, and Research / RO-Crate - Introduction π§
- FAIR Data, Workflows, and Research / RO-Crate in Python π§
- FAIR Data, Workflows, and Research / Best practices for workflows in GitHub repositories π§
- Statistics and machine learning / Classification in Machine Learning π§
- Statistics and machine learning / A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy π§
- Statistics and machine learning / Basics of machine learning π§
- Statistics and machine learning / Age prediction using machine learning π§
- Statistics and machine learning / Fine tune large protein model (ProtTrans) using HuggingFace π§
- Statistics and machine learning / Introduction to deep learning π§
- Statistics and machine learning / Machine learning: classification and regression π§
- Statistics and machine learning / Clustering in Machine Learning π§
- Statistics and machine learning / Regression in Machine Learning π§
- Introduction to Galaxy Analyses / Von Peaks zu Genen π
- Introduction to Galaxy Analyses / De picos a genes π
- Introduction to Galaxy Analyses / Dai picchi ai geni π
7 Slides
- Galaxy Server administration / Gearing towards production π§
- Development in Galaxy / Tool development and integration into Galaxy π§
- Transcriptomics / Introduction to Transcriptomics π§
- Statistics and machine learning / Classification in Machine Learning π§
- Statistics and machine learning / Introduction to Machine learning π§
- Statistics and machine learning / Fine-tuning Protein Language Model π§
- Statistics and machine learning / Regression in Machine Learning π§
4 FAQs
- How do I cite the tools I used in my history?
- How do I manage my Galaxy storage?
- How do I manage my repositories on Galaxy?
- How do I re-use equivalent jobs in Galaxy (aka Job Cache)?
3 Events
- Galaxy Training Academy 2025 πͺ π§βπ«
- Galaxy Training Academy 2026 π§βπ«
Your Contributor Card
GitHub Activity
github Issues Reported
21 Merged Pull Requests
See all of the github Pull Requests and github Commits by Armin Dadras.
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Introductory tutorial for Dataverse integration
introductiongalaxy-interface -
Updated the workflow of OpenRefine according to the best practices and updated the workflow file.
GTAdigital-humanities
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Add bio for European Union in ORGANISATIONS.yaml
template-and-tools
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Fix: Explicitly use conda-provided gem binary during install to avoid macOS system Ruby conflicts
template-and-toolscontributing
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Galaxy hub grants update for grants.yaml file
template-and-tools
Reviewed 19 PRs
We love our community reviewing each other's work!
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Introductory tutorial for Dataverse integration
introductiongalaxy-interface
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New Tutorial [WIP] Whisper for speech recognition
digital-humanities -
[News Item] Add BioNT project announcement for translated tutorials
news
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fix param
microbiome -
Fix join date for Daniela Schneider
template-and-tools
News
Survey about a week-long Galaxy Admin Training in Europe
GTN is now integrated with WorkflowHub
GTN contributor since 2025-01
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