FAIR Data, Workflows, and Research

These lessons will teach you how to make your research objects more FAIR with practical, hands-on advice.

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

FAIR Data Management

The FAIR (Findable, Accessible, Interoperable, Reusable) data stewardship created the foundation for sharing and publishing digital assets. These lessons will apply to machine accessibility and emphasize that all digital assets should share data in a way that will enable maximum use and reuse.

Lesson Slides Hands-on Recordings Input dataset Workflows
FAIR in a nutshell
fair open data stewardship
Introduction to Data Management Plan (DMP) for Peatland Research and PeatDataHub
fair open data management plan
Making clinical datasets FAIR
fair open data stewardship
Sequence data submission to ENA
FAIR ENA
FAIR data management solutions
fair dmp data stewardship
FAIR Galaxy Training Material
fair gtn training
FAIR Bioimage Metadata
Data management Metadata Bioimaging
REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data
Data management Metadata Bioimaging
FAIRification of an RNAseq dataset
fair dmp data stewardship
Integrating InvenioRDM-compatible Repositories with Galaxy
fair InvenioRDM
Uploading Data to Zenodo from Galaxy
fair zenodo

Make workflows FAIR with RO-Crate

This section brought to you by the BY-COVID project, and will teach you how to make your research objects more FAIR with practical, hands-on advice.

Lesson Slides Hands-on Recordings Input dataset Workflows
RO-Crate - Introduction
Workflow Run RO-Crate Introduction
ro-crate
Exporting Workflow Run RO-Crates from Galaxy
ro-crate workflows
RO-Crate in Python
ro-crate jupyter-notebook
Best practices for workflows in GitHub repositories
ro-crate jupyter-notebook
Submitting workflows to LifeMonitor
ro-crate

FAIR Pointers

This series of lessons will tackle FAIR from the perspective of the 15 FAIR Principles published in 2016. You will learn about: FAIR and its origins The FAIR Principles and its basic characteristics.

Lesson Slides Hands-on Recordings Input dataset Workflows
FAIR and its Origins
fair dmp data stewardship
Metadata
fair dmp data stewardship
Data Registration
fair dmp data stewardship
Access
fair dmp data stewardship
Persistent Identifiers
fair dmp data stewardship

DataPLANT ARCs

This set of tutorials will introduce you to DataPLANT ARCs, and all the relevant tools to create your own ARCs

Lesson Slides Hands-on Recordings Input dataset Workflows
DataPLANT ARCs
plants fair data stewardship

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
An earth-system RO-Crate
earth-system ro-crate ocean marine omics
Data management in Medicinal Chemistry
fair data-management medicinal-chemistry computational-chemistry

Learning Pathways

Or have a look at one of our learning pathways involving this topic. Learning pathways are sets of tutorials curated for you by community experts to form a coherent set of lessons around a topic, building up knowledge as you go. We always recommend to follow the tutorials in the order they are listed in the pathway.
GTN logo with a multi-coloured star and the words Galaxy Training Network
FAIR Data Management

The FAIR data management training learning pathway teaches you how to organise, describe, and store research data according to the FAIR principles (Findable, Accessible, Interoperable, Reusable).

fair dmp data management data stewardship

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoSimone Leo avatar Simone Leoorcid logoLuca Pireddu avatar Luca Piredduorcid logoStian Soiland-Reyes avatar Stian Soiland-Reyesorcid logoPaul De Geest avatar Paul De Geestorcid logoKatarzyna Kamieniecka avatar Katarzyna Kamienieckaorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowicz

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Laura Cooper avatar Laura Cooperorcid logoPhilippe Rocca-Serra avatar Philippe Rocca-Serraorcid logoEli Chadwick avatar Eli Chadwickorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoStian Soiland-Reyes avatar Stian Soiland-Reyesorcid logoAndrew Mason avatar Andrew Masonorcid logoKhaled Jum'ah avatar Khaled Jum'ahorcid logoMarie Josse avatar Marie Josseorcid logoBruno P. Kinoshita avatar Bruno P. Kinoshitaorcid logoMunazah Andrabi avatar Munazah Andrabiorcid logoGabriela Lopez-Gonzalez avatar Gabriela Lopez-Gonzalezorcid logoHelena Rasche avatar Helena Rascheorcid logoJulia Jakiela avatar Julia JakielaKorneel Hens avatar Korneel HensStella Eggels avatar Stella Eggelsorcid logoEmily Angiolini avatar Emily Angioliniorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoPeter Sefton avatar Peter Seftonorcid logoArmin Dadras avatar Armin DadrasTim Beck avatar Tim Beckorcid logoKevin Frey avatar Kevin Freyorcid logoLeonid Kostrykin avatar Leonid Kostrykinorcid logoSaskia Lawson-Tovey avatar Saskia Lawson-Toveyorcid logoSabrina Zander avatar Sabrina Zanderorcid logoMartin Čech avatar Martin Čechorcid logoBranka Franicevic avatar Branka Franicevicorcid logoKatarzyna Kamieniecka avatar Katarzyna Kamienieckaorcid logoBjörn Grüning avatar Björn Grüningorcid logoPaul De Geest avatar Paul De Geestorcid logoKevin Rue-Albrecht avatar Kevin Rue-Albrechtorcid logoTeresa Müller avatar Teresa MüllerKellie Snow avatar Kellie SnowDavid López avatar David Lópezorcid logoDominik Brilhaus avatar Dominik Brilhausorcid logoMartin Kuhl avatar Martin Kuhlorcid logoNick Juty avatar Nick Jutyorcid logoXenia Perez Sitja avatar Xenia Perez Sitjaorcid logoCristina Martins Rodrigues avatar Cristina Martins Rodriguesorcid logoSara Morsy avatar Sara MorsySonal Henson avatar Sonal Hensonorcid logoWendi Bacon avatar Wendi Baconorcid logoSimone Leo avatar Simone LeoGareth Price avatar Gareth Priceorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoRobert Andrews avatar Robert Andrewsorcid logoLuca Pireddu avatar Luca Piredduorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoMarco Enrico Piras avatar Marco Enrico Pirasorcid logoYvan Le Bras avatar Yvan Le BrasSandra Ng avatar Sandra NgLaura Cooper avatar Laura Cooper

Funding

These individuals or organisations provided funding support for the development of this resource

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Australian BioCommons
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UFR
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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DASH UK
This Fellowship was funded through the ELIXIR-UK DaSH project as part of the UKRI Innovation Scholars: Data Science Training in Health and Bioscience call (DaSH). (MR/V038966/1). The project aims to embed Research Data Management (RDM) know-how into UK universities and institutes by producing and delivering training in FAIR data stewardship using ELIXIR-UK knowledge and resources.
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Melbourne Bioinformatics
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Fair-Ease
FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.
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ELIXIR Europe
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MWK
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The University of Melbourne
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DataPLANT
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DFG