Marie Josse

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Topic: Climate
• Topic: Ecology
• Learning Pathway: Discovering Galaxy through climate analysis
• Learning Pathway: Tool development for a nice & shiny subdomain

Tutorials

• Development in Galaxy / Galaxy Interactive Tools ✍️ 🧐
• FAIR Data, Workflows, and Research / Exporting Workflow Run RO-Crates from Galaxy 📝 🧐
• Galaxy Community Building / Creation of the labs in the different Galaxy instances for your community 🧐
• Galaxy Community Building / Creation of a Galaxy tutorial table for your community 🧐
• Galaxy Community Building / Creation of resources listing all the tools and their metadata relevant to your community 🧐
• Galaxy Community Building / Make your tools available on your subdomain ✍️ 🧐
• Galaxy Community Building / Creation of resources listing Galaxy workflow for your community 🧐
• Climate / Ocean's variables study ✍️ 🧐
• Climate / Analyse Argo data ✍️ 🧐
• Climate / Sentinel 5P data visualisation ✍️
• Climate / Ocean Data View (ODV) ✍️ 🧐
• Climate / Nitrate DMQC for autonomous platforms such as Argo floats ✍️ 🧐
• Climate / Getting your hands-on earth data ✍️ 🧐
• Ecology / Life Traits Ecoregionalization workflow 🧐
• Ecology / Species distribution modeling 🧐
• Ecology / Visualize EBV cube data with Panoply netCDF viewer ✍️ 🧐
• Ecology / Biodiversity data exploration ✍️
• Ecology / Phylodiversity analysis quick tutorial 🧐
• Ecology / Taxonomic Analysis of eDNA 🧐
• Ecology / From NDVI data with OpenEO to time series visualisation with Holoviews ✍️ 🧐
• Ecology / Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities 🧐
• Ecology / Object detection with YOLO ⚙️ 🧐
• Ecology / Champs blocs indicators ✍️ 🧐
• Ecology / QGIS Web Feature Services ✍️ 🧐
• Ecology / Obis marine indicators ✍️ 🧐
• Ecology / Data submission using ENA upload Tool 🧐
• Ecology / Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS 🧐
• Ecology / RAD-Seq de-novo data analysis 🧐
• Ecology / Sentinel 2 biodiversity ✍️
• Ecology / Marine Omics identifying biosynthetic gene clusters ✍️
• Ecology / Compute and analyze biodiversity metrics with PAMPA toolsuite 🧐
• Ecology / RAD-Seq Reference-based data analysis 🧐
• Ecology / RAD-Seq to construct genetic maps 🧐
• Ecology / Cleaning GBIF data using OpenRefine 🧐
• Ecology / Ecoregionalization workflow tutorial ⚙️
• Ecology / Metabarcoding/eDNA through Obitools 🧐
• Ecology / Regional GAM 🧐
• Ecology / SAM3 – AI-based Semantic Segmentation of marine biodiversity Images and Videos 🧐
• Contributing to the Galaxy Training Material / Tools, Data, and Workflows for tutorials 🧐
• Galaxy Server administration / Create a subdomain for your community on UseGalaxy.eu ✍️ 🧐
• Galaxy Server administration / Adding file-sources to Galaxy ✍️
• Ecology / Production d'indicateurs champs de bloc ✍️
• Ecology / SAM3 – Segmentation sémantique d'images et de vidéos via IA 🧐

Slides

• FAIR Data, Workflows, and Research / An earth-system RO-Crate ✍️

FAQs

• Creating a dataset collection with autobuild
• Running a workflow

Events

• Galaxy Beyond Basics: Mastering Workflows, Automation, and Scalability 🎪 🧑‍🏫

GitHub Activity

github Issues Reported

30 Merged Pull Requests

See all of the github Pull Requests and github Commits by Marie Josse.

• add letter a-e in text
  faqs
• Review community tuto
• Qcv analysis update
  template-and-tools
  climate
  faqs
• Add new earth system tuto on ocean
  climate
• Add first file-source tutorial
  admin

Reviewed 21 PRs

We love our community reviewing each other's work!

• Update metadata.yaml Clean ecology topics training section
  ecology
• Create tutorial.md yolo detection marine ecology
  template-and-tools
  ecology
• Add new tutorial for SAM3
  template-and-tools
  ecology
• Add Marie Jossé to Ecology Editorial board
  template-and-tools
  ecology
• Review community tuto

External Links

Favourite Topics

Favourite Formats