Tristan Reynolds

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

2 Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Topic: Assembly
• Topic: Variant Analysis

33 Tutorials

• Microbiome / 16S Microbial Analysis with mothur (extended) 📝
• Microbiome / Taxonomic Profiling and Visualization of Metagenomic Data 📝
• Microbiome / Introduction to Metabarcoding using QIIME 2 ✍️ 🧐
• Microbiome / 16S Microbial Analysis with mothur (short) 📝
• FAIR Data, Workflows, and Research / Uploading Data to Zenodo from Galaxy ✍️ 🧐
• FAIR Data, Workflows, and Research / Integrating InvenioRDM-compatible Repositories with Galaxy ✍️ 🧐
• Introduction to Galaxy Analyses / Best Practices for Citing Galaxy ✍️ 🧐
• Sequence Analysis / Mapping 📝
• Sequence Analysis / Quality and contamination control in bacterial isolate using Illumina MiSeq Data 📝
• Variant Analysis / Pangenome variant calling with DeepVariant 🧐
• Variant Analysis / Calculating CHEK2 variant effect scores from MAVE data with CountESS ✍️ 🧐
• Variant Analysis / M. tuberculosis Variant Analysis 📝
• Ecology / Checking expected species and contamination in bacterial isolate 📝
• Transcriptomics / 1: RNA-Seq reads to counts 📝
• Genome Annotation / Genome annotation with Braker3 📝
• Genome Annotation / Identification of AMR genes in an assembled bacterial genome 📝
• Assembly / Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data) 📝
• Assembly / Hybrid genome assembly - Nanopore and Illumina ✍️ 🧐
• Assembly / De Bruijn Graph Assembly 📝 🧐
• Assembly / Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data 📝
• Epigenetics / Hi-C analysis of Drosophila melanogaster cells using HiCExplorer 📝
• Epigenetics / ATAC-Seq data analysis 📝
• Epigenetics / Formation of the Super-Structures on the Inactive X 📝
• Sequence Analysis / Mapping 📝
• Sequence Analysis / Mapeo 📝
• Sequence Analysis / Mappatura 📝

1 FAQ

• Creating a paired collection

4 Video Recordings

• Introduction to Galaxy Analyses / A short introduction to Galaxy 💬 🗣
• Sequence Analysis / Mapping 💬 🗣

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GitHub Activity

github Issues Reported

25 Merged Pull Requests

See all of the github Pull Requests and github Commits by Tristan Reynolds.

• Add Tutorial on Dunnart Sample Metabarcoding using QIIME2
  template-and-tools
  microbiome
• Add subtopics to group the Assembly tutorials
  template-and-tools
  assembly
• Update Genome annotation with Braker3
  genome-annotation
• Updating Hybrid genome assembly tutorial
  assembly
• Update 1: RNA-Seq Reads to Counts
  transcriptomics

Reviewed 6 PRs

We love our community reviewing each other's work!

• Add Tutorial on Dunnart Sample Metabarcoding using QIIME2
  template-and-tools
  microbiome
• Add a tutorial to Pangenome Variant Calling with VG Giraffe and DeepVariant
  variant-analysis
• Add new CountESS tutorial
  work-in-progress
  variant-analysis
  template-and-tools
• Update spades to use PE collection in De Bruijn Graph Assembly tutorial
  template-and-tools
  assembly
• New Tutorials on How to Cite Galaxy and Integrate InvenioRDM Repositories with Galaxy
  introduction
  fair

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