Tristan Reynolds

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

2 Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Topic: Assembly
• Topic: Variant Analysis

27 Tutorials

• Variant Analysis / M. tuberculosis Variant Analysis 📝
• Introduction to Galaxy Analyses / Best Practices for Citing Galaxy ✍️ 🧐
• Microbiome / 16S Microbial Analysis with mothur (short) 📝
• Microbiome / Taxonomic Profiling and Visualization of Metagenomic Data 📝
• Microbiome / 16S Microbial Analysis with mothur (extended) 📝
• Epigenetics / Formation of the Super-Structures on the Inactive X 📝
• Epigenetics / ATAC-Seq data analysis 📝
• Epigenetics / Hi-C analysis of Drosophila melanogaster cells using HiCExplorer 📝
• Genome Annotation / Identification of AMR genes in an assembled bacterial genome 📝
• Ecology / Checking expected species and contamination in bacterial isolate 📝
• FAIR Data, Workflows, and Research / Integrating InvenioRDM-compatible Repositories with Galaxy ✍️ 🧐
• FAIR Data, Workflows, and Research / Uploading Data to Zenodo from Galaxy ✍️ 🧐
• Assembly / Hybrid genome assembly - Nanopore and Illumina ✍️ 🧐
• Assembly / Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data) 📝
• Assembly / De Bruijn Graph Assembly 📝 🧐
• Assembly / Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data 📝
• Sequence analysis / Quality and contamination control in bacterial isolate using Illumina MiSeq Data 📝
• Sequence analysis / Mapping 📝
• Transcriptomics / 1: RNA-Seq reads to counts 📝
• Sequence analysis / Mapping 📝
• Sequence analysis / Mapeo 📝
• Sequence analysis / Mappatura 📝

1 FAQ

• Creating a paired collection

4 Video Recordings

• Introduction to Galaxy Analyses / A short introduction to Galaxy 💬 🗣
• Sequence analysis / Mapping 💬 🗣

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GitHub Activity

github Issues Reported

19 Merged Pull Requests

See all of the github Pull Requests and github Commits by Tristan Reynolds.

• Update recentrifuge input in bacterial isolate contamination tutorial
  ecology
• Adding funding organisations to tutorials
  admin
  variant-analysis
  introduction
  template-and-tools
  assembly
• Update spades to use PE collection in De Bruijn Graph Assembly tutorial
  template-and-tools
  assembly
• Update fastp and kraken2 to use PE collection in TB Variant Analysis tutorial
  variant-analysis
• Update fastp to use PE collection in MRSA Nanopore Genome Assembly tutorial
  assembly

Reviewed 3 PRs

We love our community reviewing each other's work!

• Update spades to use PE collection in De Bruijn Graph Assembly tutorial
  template-and-tools
  assembly
• New Tutorials on How to Cite Galaxy and Integrate InvenioRDM Repositories with Galaxy
  introduction
  fair
• Submitting a New Hybrid Genome Assembly Tutorial
  template-and-tools
  assembly

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