Genome Annotation
Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.
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Requirements
Before diving into this topic, we recommend you to have a look at:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Introduction
Start here if you are new to genome annotation in Galaxy.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
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Introduction to Genome Annotation
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Prokaryotes
Annotation of prokaryotic genomes.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Essential genes detection with Transposon insertion sequencing | |||||
| Bacterial Genome Annotation | |||||
| Genome annotation with Prokka | |||||
| Identification of AMR genes in an assembled bacterial genome | |||||
| Refining Genome Annotations with Apollo (prokaryotes) |
Eukaryotes
Annotation of eukaryotic genomes.
Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Comparative gene analysis in unannotated genomes | |||||
| From small to large-scale genome comparison | |||||
| Pangenome analysis with Roary |
Learning Pathways
Or have a look at one of our learning pathways involving this topic. Learning pathways are sets of tutorials curated for you by community experts to form a coherent set of lessons around a topic, building up knowledge as you go. We always recommend to follow the tutorials in the order they are listed in the pathway.
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Community Resources
Community Home Maintainer HomeEditorial Board
This material is reviewed by our Editorial Board:
Helena Rasche
Anthony Bretaudeau
Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!
Contributors
This material was contributed to by:
Esteban Perez-Wohlfeil
Miaomiao Zhou
Anton Nekrutenko
Niklas Mayle
Björn Grüning
Torsten Seemann
Deepti Varshney
Twishi Gulati
Guillaume Gautreau
Delphine Lariviere
Stéphanie Robin
Teresa Müller
Maria Doyle
Ekaterina Polkh
Saskia Hiltemann
William Durand
Nicola Soranzo
Romane LIBOUBAN
Jasper Ouwerkerk
Laura Leroi
Valentin Loux
Anna Syme
Helena Rasche
Mateo Boudet
Kenji Fujihara
Bérénice Batut
Jonathan Kreplak
Paul Zierep
Tristan Reynolds
Gildas Le Corguillé
Niall Beard
Erwan Corre
Cristóbal Gallardo
Bazante Sanders
Saim Momin
Simon Gladman
Simon Bray
Anthony Bretaudeau
Hélène Chiapello
Anika Erxleben
Nathan Dunn
Alexandre Cormier
Felicitas Kindel
Funding
These individuals or organisations provided funding support for the development of this resource
