Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Bazante Sanders

Simon Gladman

William Durand

Romane LIBOUBAN

Simon Bray

Stéphanie Robin

Helena Rasche

Anika Erxleben

Hélène Chiapello

Björn Grüning

Alexandre Cormier

Cristóbal Gallardo

Nicola Soranzo

Anthony Bretaudeau

Kenji Fujihara

Valentin Loux

Paul Zierep

Bérénice Batut

Anna Syme

Esteban Perez-Wohlfeil

Maria Doyle

Tristan Reynolds

Gildas Le Corguillé

Laura Leroi

Miaomiao Zhou

Erwan Corre

Jonathan Kreplak

Delphine Lariviere

Jasper Ouwerkerk

Nathan Dunn

Mateo Boudet

Ekaterina Polkh

Niall Beard

Twishi Gulati

Torsten Seemann

Deepti Varshney

Anton Nekrutenko

Saskia Hiltemann

Guillaume Gautreau

Teresa Müller

Felicitas Kindel

Funding

These individuals or organisations provided funding support for the development of this resource

IFB

Australian BioCommons

The University of Melbourne

Avans

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

Melbourne Bioinformatics

ABRomics

ELIXIR Europe