Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Maria Doyle

Deepti Varshney

Cristóbal Gallardo

Saskia Hiltemann

William Durand

Miaomiao Zhou

Jonathan Kreplak

Hélène Chiapello

Mateo Boudet

Laura Leroi

Niall Beard

Esteban Perez-Wohlfeil

Anika Erxleben

Stéphanie Robin

Guillaume Gautreau

Nicola Soranzo

Felicitas Kindel

Kenji Fujihara

Bérénice Batut

Anthony Bretaudeau

Nathan Dunn

Tristan Reynolds

Gildas Le Corguillé

Bazante Sanders

Torsten Seemann

Twishi Gulati

Teresa Müller

Simon Bray

Romane LIBOUBAN

Helena Rasche

Ekaterina Polkh

Björn Grüning

Delphine Lariviere

Anton Nekrutenko

Saim Momin

Paul Zierep

Simon Gladman

Erwan Corre

Niklas Mayle

Jasper Ouwerkerk

Anna Syme

Valentin Loux

Alexandre Cormier

Funding

These individuals or organisations provided funding support for the development of this resource

Avans

Australian BioCommons

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

The University of Melbourne

IFB

ELIXIR Europe

ABRomics

Melbourne Bioinformatics