Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Gildas Le Corguillé

Anthony Bretaudeau

Helena Rasche

Björn Grüning

Teresa Müller

Paul Zierep

Stéphanie Robin

Ekaterina Polkh

William Durand

Bazante Sanders

Deepti Varshney

Felicitas Kindel

Laura Leroi

Simon Bray

Valentin Loux

Simon Gladman

Niall Beard

Hélène Chiapello

Alexandre Cormier

Nathan Dunn

Anton Nekrutenko

Jonathan Kreplak

Kenji Fujihara

Guillaume Gautreau

Twishi Gulati

Erwan Corre

Jasper Ouwerkerk

Esteban Perez-Wohlfeil

Torsten Seemann

Mateo Boudet

Delphine Lariviere

Nicola Soranzo

Saskia Hiltemann

Miaomiao Zhou

Anika Erxleben

Anna Syme

Maria Doyle

Bérénice Batut

Cristóbal Gallardo

Romane LIBOUBAN

Funding

These individuals or organisations provided funding support for the development of this resource

ABRomics

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

ELIXIR Europe

IFB

Avans

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.