Genome Annotation
Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.
For any question or discussions related to this topic, or to connect with others in the community, please visit the community chat:
Requirements
Before diving into this topic, we recommend you to have a look at:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Introduction
Start here if you are new to genome annotation in Galaxy.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
|
Introduction to Genome Annotation
|
Prokaryotes
Annotation of prokaryotic genomes.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Essential genes detection with Transposon insertion sequencing | |||||
| Bacterial Genome Annotation | |||||
| Genome annotation with Prokka | |||||
| Identification of AMR genes in an assembled bacterial genome | |||||
| Refining Genome Annotations with Apollo (prokaryotes) |
Eukaryotes
Annotation of eukaryotic genomes.
Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Comparative gene analysis in unannotated genomes | |||||
| From small to large-scale genome comparison | |||||
| Pangenome analysis with Roary |
Learning Pathways
Or have a look at one of our learning pathways involving this topic. Learning pathways are sets of tutorials curated for you by community experts to form a coherent set of lessons around a topic, building up knowledge as you go. We always recommend to follow the tutorials in the order they are listed in the pathway.
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
Follow topic updates rss-feed with our RSS Feed
Community Resources
Community Home Maintainer HomeEditorial Board
This material is reviewed by our Editorial Board:
Helena Rasche
Anthony Bretaudeau
Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!
Contributors
This material was contributed to by:
Deepti Varshney
Niklas Mayle
Anna Syme
Miaomiao Zhou
Simon Gladman
Esteban Perez-Wohlfeil
Valentin Loux
Anika Erxleben
Paul Zierep
Twishi Gulati
Saskia Hiltemann
William Durand
Hélène Chiapello
Jasper Ouwerkerk
Teresa Müller
Ekaterina Polkh
Bazante Sanders
Niall Beard
Torsten Seemann
Kenji Fujihara
Saim Momin
Stéphanie Robin
Romane LIBOUBAN
Gildas Le Corguillé
Björn Grüning
Anton Nekrutenko
Anthony Bretaudeau
Bérénice Batut
Laura Leroi
Simon Bray
Erwan Corre
Nicola Soranzo
Guillaume Gautreau
Cristóbal Gallardo
Maria Doyle
Jonathan Kreplak
Felicitas Kindel
Alexandre Cormier
Mateo Boudet
Nathan Dunn
Helena Rasche
Tristan Reynolds
Delphine Lariviere
Funding
These individuals or organisations provided funding support for the development of this resource
