Genome Annotation
Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.
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Requirements
Before diving into this topic, we recommend you to have a look at:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Introduction
Start here if you are new to genome annotation in Galaxy.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
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Introduction to Genome Annotation
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Prokaryotes
Annotation of prokaryotic genomes.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Essential genes detection with Transposon insertion sequencing | |||||
| Bacterial Genome Annotation | |||||
| Genome annotation with Prokka | |||||
| Identification of AMR genes in an assembled bacterial genome | |||||
| Refining Genome Annotations with Apollo (prokaryotes) |
Eukaryotes
Annotation of eukaryotic genomes.
Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Comparative gene analysis in unannotated genomes | |||||
| From small to large-scale genome comparison | |||||
| Pangenome analysis with Roary |
Learning Pathways
Or have a look at one of our learning pathways involving this topic. Learning pathways are sets of tutorials curated for you by community experts to form a coherent set of lessons around a topic, building up knowledge as you go. We always recommend to follow the tutorials in the order they are listed in the pathway.
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Community Resources
Community Home Maintainer HomeEditorial Board
This material is reviewed by our Editorial Board:
Helena Rasche
Anthony Bretaudeau
Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!
Contributors
This material was contributed to by:
Stéphanie Robin
Miaomiao Zhou
Nathan Dunn
Simon Gladman
Valentin Loux
Romane LIBOUBAN
Jonathan Kreplak
Teresa Müller
Kenji Fujihara
Cristóbal Gallardo
Erwan Corre
Anna Syme
Ekaterina Polkh
Helena Rasche
Torsten Seemann
Björn Grüning
Niall Beard
Nicola Soranzo
Saskia Hiltemann
Hélène Chiapello
Anthony Bretaudeau
Maria Doyle
Esteban Perez-Wohlfeil
Paul Zierep
Laura Leroi
Anika Erxleben
Simon Bray
Alexandre Cormier
Felicitas Kindel
Delphine Lariviere
Bérénice Batut
Gildas Le Corguillé
Mateo Boudet
Tristan Reynolds
William Durand
Bazante Sanders
Saim Momin
Deepti Varshney
Twishi Gulati
Anton Nekrutenko
Guillaume Gautreau
Niklas Mayle
Jasper Ouwerkerk
Funding
These individuals or organisations provided funding support for the development of this resource
