Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

For any question or discussions related to this topic, or to connect with others in the community, please visit the community chat:

comment   Community Matrix Chat

Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

Follow topic updates rss-feed with our RSS Feed

Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Hélène Chiapello

Björn Grüning

Kenji Fujihara

Anika Erxleben

Anthony Bretaudeau

Simon Gladman

Paul Zierep

Tristan Reynolds

Torsten Seemann

Jonathan Kreplak

Anton Nekrutenko

Deepti Varshney

William Durand

Simon Bray

Guillaume Gautreau

Niklas Mayle

Stéphanie Robin

Bérénice Batut

Mateo Boudet

Jasper Ouwerkerk

Gildas Le Corguillé

Anna Syme

Esteban Perez-Wohlfeil

Bazante Sanders

Cristóbal Gallardo

Teresa Müller

Twishi Gulati

Nicola Soranzo

Felicitas Kindel

Miaomiao Zhou

Ekaterina Polkh

Delphine Lariviere

Laura Leroi

Saskia Hiltemann

Erwan Corre

Niall Beard

Nathan Dunn

Romane LIBOUBAN

Maria Doyle

Valentin Loux

Saim Momin

Helena Rasche

Alexandre Cormier

Funding

These individuals or organisations provided funding support for the development of this resource

Melbourne Bioinformatics

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

ELIXIR Europe

Avans

ABRomics

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Australian BioCommons

IFB

The University of Melbourne