Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Nathan Dunn

Helena Rasche

Deepti Varshney

Stéphanie Robin

Alexandre Cormier

Maria Doyle

Nicola Soranzo

William Durand

Bérénice Batut

Paul Zierep

Romane LIBOUBAN

Gildas Le Corguillé

Cristóbal Gallardo

Erwan Corre

Delphine Lariviere

Valentin Loux

Simon Gladman

Anika Erxleben

Kenji Fujihara

Anna Syme

Laura Leroi

Simon Bray

Hélène Chiapello

Ekaterina Polkh

Miaomiao Zhou

Jasper Ouwerkerk

Anton Nekrutenko

Anthony Bretaudeau

Esteban Perez-Wohlfeil

Björn Grüning

Saskia Hiltemann

Bazante Sanders

Twishi Gulati

Torsten Seemann

Felicitas Kindel

Jonathan Kreplak

Guillaume Gautreau

Teresa Müller

Mateo Boudet

Niall Beard

Funding

These individuals or organisations provided funding support for the development of this resource

IFB

Avans

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

ELIXIR Europe

ABRomics

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.