Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Bérénice Batut

Romane LIBOUBAN

Hélène Chiapello

Erwan Corre

Anton Nekrutenko

Delphine Lariviere

Esteban Perez-Wohlfeil

Felicitas Kindel

Ekaterina Polkh

Anna Syme

Simon Gladman

William Durand

Björn Grüning

Simon Bray

Niall Beard

Guillaume Gautreau

Nathan Dunn

Laura Leroi

Maria Doyle

Kenji Fujihara

Cristóbal Gallardo

Torsten Seemann

Bazante Sanders

Anika Erxleben

Stéphanie Robin

Valentin Loux

Teresa Müller

Twishi Gulati

Paul Zierep

Alexandre Cormier

Saskia Hiltemann

Jasper Ouwerkerk

Anthony Bretaudeau

Jonathan Kreplak

Gildas Le Corguillé

Deepti Varshney

Nicola Soranzo

Miaomiao Zhou

Mateo Boudet

Helena Rasche

Funding

These individuals or organisations provided funding support for the development of this resource

ELIXIR Europe

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

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ABRomics

IFB