Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Anna Syme

Hélène Chiapello

Laura Leroi

Maria Doyle

Erwan Corre

Teresa Müller

Niall Beard

Miaomiao Zhou

Bérénice Batut

Torsten Seemann

Delphine Lariviere

Bazante Sanders

Helena Rasche

Anthony Bretaudeau

Stéphanie Robin

Mateo Boudet

Niklas Mayle

Saskia Hiltemann

Björn Grüning

Guillaume Gautreau

William Durand

Anton Nekrutenko

Gildas Le Corguillé

Simon Bray

Nathan Dunn

Nicola Soranzo

Saim Momin

Alexandre Cormier

Esteban Perez-Wohlfeil

Simon Gladman

Twishi Gulati

Cristóbal Gallardo

Jonathan Kreplak

Valentin Loux

Jasper Ouwerkerk

Paul Zierep

Felicitas Kindel

Anika Erxleben

Kenji Fujihara

Tristan Reynolds

Deepti Varshney

Ekaterina Polkh

Romane LIBOUBAN

Funding

These individuals or organisations provided funding support for the development of this resource

Melbourne Bioinformatics

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

ABRomics

Avans

ELIXIR Europe

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

The University of Melbourne

IFB

Australian BioCommons