Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Cristóbal Gallardo

Simon Bray

Esteban Perez-Wohlfeil

Bérénice Batut

Paul Zierep

Anthony Bretaudeau

Helena Rasche

Björn Grüning

Alexandre Cormier

Anna Syme

Torsten Seemann

Miaomiao Zhou

Anika Erxleben

Anton Nekrutenko

Ekaterina Polkh

Mateo Boudet

Delphine Lariviere

William Durand

Hélène Chiapello

Felicitas Kindel

Kenji Fujihara

Erwan Corre

Gildas Le Corguillé

Romane LIBOUBAN

Maria Doyle

Teresa Müller

Saskia Hiltemann

Jonathan Kreplak

Niall Beard

Laura Leroi

Valentin Loux

Bazante Sanders

Simon Gladman

Stéphanie Robin

Nicola Soranzo

Twishi Gulati

Deepti Varshney

Guillaume Gautreau

Nathan Dunn

Jasper Ouwerkerk

Funding

These individuals or organisations provided funding support for the development of this resource

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Avans

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

ABRomics

ELIXIR Europe

IFB