Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Erwan Corre

Niall Beard

Nicola Soranzo

Torsten Seemann

Mateo Boudet

Simon Gladman

Teresa Müller

Twishi Gulati

Valentin Loux

Alexandre Cormier

Maria Doyle

Bazante Sanders

Guillaume Gautreau

Stéphanie Robin

Bérénice Batut

Jasper Ouwerkerk

Anton Nekrutenko

Laura Leroi

Kenji Fujihara

Tristan Reynolds

Jonathan Kreplak

Paul Zierep

Nathan Dunn

Saskia Hiltemann

Esteban Perez-Wohlfeil

Deepti Varshney

Hélène Chiapello

Felicitas Kindel

Delphine Lariviere

Niklas Mayle

Saim Momin

Simon Bray

Romane LIBOUBAN

Gildas Le Corguillé

Ekaterina Polkh

Björn Grüning

Cristóbal Gallardo

Anna Syme

William Durand

Miaomiao Zhou

Anthony Bretaudeau

Anika Erxleben

Helena Rasche

Funding

These individuals or organisations provided funding support for the development of this resource

Australian BioCommons

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

IFB

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

ABRomics

Melbourne Bioinformatics

The University of Melbourne

Avans

ELIXIR Europe