Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Contributors

This material was contributed to by:

Kenji Fujihara

Miaomiao Zhou

Alexandre Cormier

Gildas Le Corguillé

Anna Syme

Delphine Lariviere

Jasper Ouwerkerk

Bazante Sanders

Twishi Gulati

Hélène Chiapello

Stéphanie Robin

Paul Zierep

Valentin Loux

Anton Nekrutenko

Felicitas Kindel

Romane LIBOUBAN

Ekaterina Polkh

Niall Beard

Anika Erxleben

Teresa Müller

Anthony Bretaudeau

Guillaume Gautreau

Nathan Dunn

Nicola Soranzo

William Durand

Bérénice Batut

Maria Doyle

Deepti Varshney

Jonathan Kreplak

Erwan Corre

Simon Gladman

Björn Grüning

Laura Leroi

Simon Bray

Helena Rasche

Mateo Boudet

Esteban Perez-Wohlfeil

Cristóbal Gallardo

Torsten Seemann

Saskia Hiltemann

Funding

These individuals or organisations provided funding support for the development of this resource

IFB

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Avans

ABRomics

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

ELIXIR Europe