Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Simon Gladman

Tristan Reynolds

Anthony Bretaudeau

Laura Leroi

Romane LIBOUBAN

Anna Syme

Nicola Soranzo

Kenji Fujihara

Jasper Ouwerkerk

Anika Erxleben

Esteban Perez-Wohlfeil

Ekaterina Polkh

Bérénice Batut

Twishi Gulati

Stéphanie Robin

Helena Rasche

Saskia Hiltemann

Anton Nekrutenko

Miaomiao Zhou

Felicitas Kindel

Jonathan Kreplak

Hélène Chiapello

Teresa Müller

Nathan Dunn

Björn Grüning

Simon Bray

Cristóbal Gallardo

Paul Zierep

William Durand

Alexandre Cormier

Erwan Corre

Gildas Le Corguillé

Deepti Varshney

Niall Beard

Delphine Lariviere

Valentin Loux

Maria Doyle

Guillaume Gautreau

Torsten Seemann

Bazante Sanders

Mateo Boudet

Funding

These individuals or organisations provided funding support for the development of this resource

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

Australian BioCommons

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

The University of Melbourne

Avans

IFB

Melbourne Bioinformatics

ELIXIR Europe

ABRomics