Genome Annotation
Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.
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Requirements
Before diving into this topic, we recommend you to have a look at:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Introduction
Start here if you are new to genome annotation in Galaxy.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
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Introduction to Genome Annotation
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Prokaryotes
Annotation of prokaryotic genomes.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Essential genes detection with Transposon insertion sequencing | |||||
| Bacterial Genome Annotation | |||||
| Genome annotation with Prokka | |||||
| Identification of AMR genes in an assembled bacterial genome | |||||
| Refining Genome Annotations with Apollo (prokaryotes) |
Eukaryotes
Annotation of eukaryotic genomes.
Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Comparative gene analysis in unannotated genomes | |||||
| From small to large-scale genome comparison | |||||
| Pangenome analysis with Roary |
Learning Pathways
Or have a look at one of our learning pathways involving this topic. Learning pathways are sets of tutorials curated for you by community experts to form a coherent set of lessons around a topic, building up knowledge as you go. We always recommend to follow the tutorials in the order they are listed in the pathway.
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Community Resources
Community Home Maintainer HomeEditorial Board
This material is reviewed by our Editorial Board:
Helena Rasche
Anthony Bretaudeau
Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!
Contributors
This material was contributed to by:
Laura Leroi
Twishi Gulati
Bérénice Batut
Simon Gladman
Deepti Varshney
Maria Doyle
Anika Erxleben
Anna Syme
Valentin Loux
Guillaume Gautreau
Jasper Ouwerkerk
Kenji Fujihara
Erwan Corre
Miaomiao Zhou
Paul Zierep
Anthony Bretaudeau
Anton Nekrutenko
Jonathan Kreplak
Helena Rasche
Simon Bray
Torsten Seemann
Nathan Dunn
Cristóbal Gallardo
Mateo Boudet
Björn Grüning
Alexandre Cormier
Gildas Le Corguillé
Delphine Lariviere
Bazante Sanders
Tristan Reynolds
Saim Momin
Niall Beard
William Durand
Felicitas Kindel
Niklas Mayle
Esteban Perez-Wohlfeil
Teresa Müller
Stéphanie Robin
Ekaterina Polkh
Saskia Hiltemann
Hélène Chiapello
Nicola Soranzo
Romane LIBOUBAN
Funding
These individuals or organisations provided funding support for the development of this resource
