Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Simon Bray

Alexandre Cormier

Ekaterina Polkh

Esteban Perez-Wohlfeil

Jonathan Kreplak

Niklas Mayle

Maria Doyle

Cristóbal Gallardo

Anton Nekrutenko

Erwan Corre

Paul Zierep

Niall Beard

Simon Gladman

Mateo Boudet

Stéphanie Robin

Kenji Fujihara

Hélène Chiapello

Anthony Bretaudeau

Laura Leroi

Helena Rasche

Saskia Hiltemann

William Durand

Twishi Gulati

Torsten Seemann

Nathan Dunn

Nicola Soranzo

Björn Grüning

Romane LIBOUBAN

Guillaume Gautreau

Teresa Müller

Jasper Ouwerkerk

Valentin Loux

Anna Syme

Deepti Varshney

Bazante Sanders

Anika Erxleben

Tristan Reynolds

Delphine Lariviere

Bérénice Batut

Gildas Le Corguillé

Miaomiao Zhou

Felicitas Kindel

Saim Momin

Funding

These individuals or organisations provided funding support for the development of this resource

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

Avans

ABRomics

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Melbourne Bioinformatics

The University of Melbourne

ELIXIR Europe

Australian BioCommons

IFB