Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Nicola Soranzo

Anna Syme

Delphine Lariviere

Maria Doyle

Erwan Corre

Simon Bray

Stéphanie Robin

Helena Rasche

Nathan Dunn

Anthony Bretaudeau

Anton Nekrutenko

Bérénice Batut

Bazante Sanders

Björn Grüning

Romane LIBOUBAN

Mateo Boudet

Alexandre Cormier

Kenji Fujihara

Miaomiao Zhou

Simon Gladman

Jonathan Kreplak

Paul Zierep

Saskia Hiltemann

Torsten Seemann

Ekaterina Polkh

Twishi Gulati

Cristóbal Gallardo

Esteban Perez-Wohlfeil

Guillaume Gautreau

Gildas Le Corguillé

Jasper Ouwerkerk

William Durand

Hélène Chiapello

Anika Erxleben

Niall Beard

Teresa Müller

Valentin Loux

Laura Leroi

Felicitas Kindel

Deepti Varshney

Funding

These individuals or organisations provided funding support for the development of this resource

ELIXIR Europe

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

ABRomics

Avans

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

IFB