Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Cristóbal Gallardo

Guillaume Gautreau

Valentin Loux

Alexandre Cormier

Saskia Hiltemann

Teresa Müller

Tristan Reynolds

Delphine Lariviere

Bérénice Batut

Simon Bray

Ekaterina Polkh

Helena Rasche

Paul Zierep

Esteban Perez-Wohlfeil

Björn Grüning

Miaomiao Zhou

Nathan Dunn

Mateo Boudet

Kenji Fujihara

Nicola Soranzo

Anton Nekrutenko

Twishi Gulati

Hélène Chiapello

Stéphanie Robin

William Durand

Deepti Varshney

Gildas Le Corguillé

Anthony Bretaudeau

Niall Beard

Bazante Sanders

Simon Gladman

Jasper Ouwerkerk

Romane LIBOUBAN

Felicitas Kindel

Anika Erxleben

Laura Leroi

Erwan Corre

Jonathan Kreplak

Torsten Seemann

Maria Doyle

Anna Syme

Funding

These individuals or organisations provided funding support for the development of this resource

ABRomics

The University of Melbourne

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

Australian BioCommons

ELIXIR Europe

Avans

IFB

Melbourne Bioinformatics