Genome Annotation
Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.
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Requirements
Before diving into this topic, we recommend you to have a look at:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Introduction
Start here if you are new to genome annotation in Galaxy.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
|
Introduction to Genome Annotation
|
Prokaryotes
Annotation of prokaryotic genomes.
Eukaryotes
Annotation of eukaryotic genomes.
Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Comparative gene analysis in unannotated genomes | |||||
| From small to large-scale genome comparison | |||||
| Pangenome analysis with Roary |
Learning Pathways
Or have a look at one of our learning pathways involving this topic. Learning pathways are sets of tutorials curated for you by community experts to form a coherent set of lessons around a topic, building up knowledge as you go. We always recommend to follow the tutorials in the order they are listed in the pathway.
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Community Resources
Community Home Maintainer HomeEditorial Board
This material is reviewed by our Editorial Board:
Helena Rasche
Anthony Bretaudeau
Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!
Contributors
This material was contributed to by:
Björn Grüning
Simon Bray
Paul Zierep
Helena Rasche
Anika Erxleben
Kenji Fujihara
Bérénice Batut
Niall Beard
Solenne Correard
Mateo Boudet
Anton Nekrutenko
Saim Momin
Bazante Sanders
Felicitas Kindel
Saskia Hiltemann
Esteban Perez-Wohlfeil
Erwan Corre
Twishi Gulati
Maria Doyle
Gildas Le Corguillé
Vesselin Baev
Romane LIBOUBAN
Anthony Bretaudeau
Nathan Dunn
Guillaume Gautreau
Stéphanie Robin
Alexandre Cormier
Valentin Loux
Ekaterina Polkh
Hélène Chiapello
Nicola Soranzo
Delphine Lariviere
Torsten Seemann
Jasper Ouwerkerk
Teresa Müller
Simon Gladman
Donny Vrins
Cristóbal Gallardo
Niklas Mayle
William Durand
Miaomiao Zhou
Jonathan Kreplak
Tristan Reynolds
Deepti Varshney
Laura Leroi
Anna Syme
Funding
These individuals or organisations provided funding support for the development of this resource
