Genome Annotation
Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.
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Requirements
Before diving into this topic, we recommend you to have a look at:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Introduction
Start here if you are new to genome annotation in Galaxy.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
|
Introduction to Genome Annotation
|
Prokaryotes
Annotation of prokaryotic genomes.
Eukaryotes
Annotation of eukaryotic genomes.
Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Comparative gene analysis in unannotated genomes | |||||
| From small to large-scale genome comparison | |||||
| Pangenome analysis with Roary |
Learning Pathways
Or have a look at one of our learning pathways involving this topic. Learning pathways are sets of tutorials curated for you by community experts to form a coherent set of lessons around a topic, building up knowledge as you go. We always recommend to follow the tutorials in the order they are listed in the pathway.
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Community Resources
Community Home Maintainer HomeEditorial Board
This material is reviewed by our Editorial Board:
Helena Rasche
Anthony Bretaudeau
Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!
Contributors
This material was contributed to by:
Deepti Varshney
William Durand
Vesselin Baev
Saim Momin
Anna Syme
Cristóbal Gallardo
Niall Beard
Hélène Chiapello
Torsten Seemann
Jonathan Kreplak
Delphine Lariviere
Valentin Loux
Mateo Boudet
Felicitas Kindel
Nathan Dunn
Miaomiao Zhou
Simon Gladman
Tristan Reynolds
Paul Zierep
Anthony Bretaudeau
Anika Erxleben
Bérénice Batut
Esteban Perez-Wohlfeil
Teresa Müller
Erwan Corre
Helena Rasche
Gildas Le Corguillé
Anton Nekrutenko
Simon Bray
Jasper Ouwerkerk
Bazante Sanders
Guillaume Gautreau
Stéphanie Robin
Niklas Mayle
Björn Grüning
Alexandre Cormier
Laura Leroi
Romane LIBOUBAN
Twishi Gulati
Nicola Soranzo
Kenji Fujihara
Saskia Hiltemann
Maria Doyle
Ekaterina Polkh
Funding
These individuals or organisations provided funding support for the development of this resource
