Paul Zierep
Affiliations
UFR
ELIXIR Europe
de.NBI
MWK
MVDContributions
The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
2 Editorial Roles
This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.
- Topic: Microbiome
- Learning Pathway: Building and Annotating Metagenome-Assembled Genomes (MAGs) from Metagenomics Reads
31 Tutorials
- Assembly / Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data π§
- Genome Annotation / Secondary metabolite discovery βοΈ π§
- Genome Annotation / Bacterial Genome Annotation π§
- Development in Galaxy / Adding and updating best practice metadata for Galaxy tools using the bio.tools registry βοΈ π§
- Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition βοΈ π§
- Microbiome / Taxonomic Profiling and Visualization of Metagenomic Data βοΈ π§
- Microbiome / MGnify v5.0 Amplicon Pipeline π§
- Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data π π§
- Microbiome / Calculating Ξ± and Ξ² diversity from microbiome taxonomic data βοΈ π§
- Microbiome / Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads π π§
- Microbiome / Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2 π§
- Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short) βοΈ π§
- Microbiome / Remove contamination and host reads π§
- Microbiome / Binning of metagenomic sequencing data βοΈ π§
- Microbiome / Assembly of metagenomic sequencing data βοΈ π§
- Microbiome / Building an amplicon sequence variant (ASV) table from 16S data using DADA2 π§
- Galaxy Community Building / Creation of the labs in the different Galaxy instances for your community βοΈ
- Galaxy Community Building / Creation of resources listing Galaxy workflow for your community βοΈ
- Galaxy Community Building / Creation of a Galaxy tutorial table for your community βοΈ
- Galaxy Community Building / Creation of resources listing all the tools and their metadata relevant to your community βοΈ π§
1 Slide
2 FAQs
- Force a tool to process collection jobs one by one instead of using the collection as input
- Merge Reads for Co/Grouped Assembly
8 Video Recordings
- Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data π¬ π£
- Microbiome / Calculating Ξ± and Ξ² diversity from microbiome taxonomic data π¬ π£
- Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short) π¬ π£
- Microbiome / Binning of metagenomic sequencing data π¬ π£
7 Events
- Workshop on high-throughput sequencing data analysis with Galaxy π§βπ«
- Workshop on high-throughput sequencing data analysis with Galaxy π§βπ«
- Galaxy Training Academy 2025 π§βπ«
- From Data to Discovery: Metagenomics, RNA-Seq - NGS Bioinformatics with Galaxy π§βπ«
- Workshop on high-throughput sequencing data analysis with Galaxy π§βπ«
- Galaxy Training Academy 2026 π§βπ«
- Galaxy Training Academy 2024 π§βπ«
Your Contributor Card
orcid Paul Zierep
Editorial board member for Microbiome
31 Tutorials 8 Videos 7 Events 2 News 2 FAQs Editorial Board 1 Slides
GTN contributor since 2023-02
GitHub Activity
github Issues Reported
30 Merged Pull Requests
See all of the github Pull Requests and github Commits by Paul Zierep.
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Fix mags-building
microbiome -
add Microbiome analysis GTA track 2026
template-and-toolsGTA
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Add command line video edits
faqs
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fix param
microbiome
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Add materialvitaldigital
template-and-tools
Reviewed 30 PRs
We love our community reviewing each other's work!
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Fix mags-building
microbiome
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Add kMetaShot as optional tool in mags building training
microbiome -
Add tags and difficulty to host removal tutorial
microbiome -
add ELIXIR-IT microbiome community training
template-and-tools
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add Microbiome analysis GTA track 2026
template-and-toolsGTA
News
Update: Workflow List now searches WorkflowHub.eu, advanced query syntax
New Paper! Ten common misconceptions about Galaxy (and why they are wrong!)
GTN contributor since 2023-02
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