Paul Zierep

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Topic: Microbiome
• Learning Pathway: Building and Annotating Metagenome-Assembled Genomes (MAGs) from Metagenomics Reads

Tutorials

• Microbiome / Calculating α and β diversity from microbiome taxonomic data ✍️ 🧐
• Microbiome / Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads 📝 🧐
• Microbiome / Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2 🧐
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short) ✍️ 🧐
• Microbiome / Taxonomic Profiling and Visualization of Metagenomic Data ✍️ 🧐
• Microbiome / Binning of metagenomic sequencing data ✍️ 🧐
• Microbiome / MGnify v5.0 Amplicon Pipeline 🧐
• Microbiome / Remove contamination and host reads 🧐
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data 📝 🧐
• Microbiome / Building an amplicon sequence variant (ASV) table from 16S data using DADA2 🧐
• Microbiome / Assembly of metagenomic sequencing data ✍️ 🧐
• Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition ✍️ 🧐
• Development in Galaxy / Adding and updating best practice metadata for Galaxy tools using the bio.tools registry ✍️ 🧐
• Genome Annotation / Bacterial Genome Annotation 🧐
• Genome Annotation / Secondary metabolite discovery ✍️ 🧐
• Assembly / Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data 🧐
• Galaxy Community Building / Creation of the labs in the different Galaxy instances for your community ✍️
• Galaxy Community Building / Creation of resources listing all the tools and their metadata relevant to your community ✍️ 🧐
• Galaxy Community Building / Creation of resources listing Galaxy workflow for your community ✍️
• Galaxy Community Building / Creation of a Galaxy tutorial table for your community ✍️

Slides

• Microbiome / Introduction to Microbiome Analysis ✍️

FAQs

• Force a tool to process collection jobs one by one instead of using the collection as input
• Merge Reads for Co/Grouped Assembly

Video Recordings

• Microbiome / Calculating α and β diversity from microbiome taxonomic data 💬 🗣
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short) 💬 🗣
• Microbiome / Binning of metagenomic sequencing data 💬 🗣
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data 💬 🗣

Events

• Workshop on high-throughput sequencing data analysis with Galaxy 🧑‍🏫
• Workshop on high-throughput sequencing data analysis with Galaxy 🧑‍🏫
• Galaxy Training Academy 2025 🧑‍🏫
• From Data to Discovery: Metagenomics, RNA-Seq - NGS Bioinformatics with Galaxy 🧑‍🏫
• Workshop on high-throughput sequencing data analysis with Galaxy 🧑‍🏫
• Galaxy Training Academy 2024 🧑‍🏫

GitHub Activity

github Issues Reported

29 Merged Pull Requests

See all of the github Pull Requests and github Commits by Paul Zierep.

• add Microbiome analysis GTA track 2026
  template-and-tools
  GTA
• Add command line video edits
  faqs
• fix param
  microbiome
• Add materialvitaldigital
  template-and-tools
• Update metagenomics
  template-and-tools

Reviewed 26 PRs

We love our community reviewing each other's work!

• add Microbiome analysis GTA track 2026
  template-and-tools
  GTA
• removed duplicated entry in CONTRIBUTORS.yaml
  template-and-tools
• [Microbiome] Add 2 modules to MAGs learning pathway
  template-and-tools
• Add new tutorial: Host removal in metagenomic data (Microbiome topic)
  template-and-tools
  microbiome
• [Microbiome] Add tutorial for MAGs building and annotation from raw reads
  faqs
  microbiome

News

External Links

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