Hans-Rudolf Hotz

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

1 Editorial Role

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Topic: Galaxy Community Building

9 Tutorials

• Epigenetics / ATAC-Seq data analysis 🧐
• Single Cell / Clustering 3K PBMCs with Scanpy ✍️ 🧐
• Single Cell / Pre-processing of 10X Single-Cell RNA Datasets ✍️ 🧐
• Galaxy Server administration / Galaxy Database schema ✍️
• Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition 📝
• Introduction to Galaxy Analyses / From peaks to genes 🧐
• Transcriptomics / Reference-based RNA-Seq data analysis 🧐

1 Slide

• Galaxy Server administration / Galaxy Administrator Time Burden and Technology Usage 🖥

4 FAQs

• Automatically trim adapters (without providing custom sequences)
• In bowtie 2 parameters, in place of 1000 for other experiments, should we mention the median fragment length observed in our library?
• Changing the heatmap colours
• UCSC import: what should my file look like?

2 Video Recordings

• Epigenetics / ATAC-Seq data analysis 💬
• Single Cell / Clustering 3K PBMCs with Scanpy 💬

2 Events

• Galaxy Training Academy 2025 🧑‍🏫
• Galaxy Training Academy 2026 🧑‍🏫

Your Contributor Card

GitHub Activity

github Issues Reported

34 Merged Pull Requests

See all of the github Pull Requests and github Commits by Hans-Rudolf Hotz.

• updating Reference-based RNA-Seq data analysis
  transcriptomics
• minor cosmetic changes to Ref-based RNA-Seq
  transcriptomics
• Update CONTRIBUTORS.yaml
  template-and-tools
• Update Reference-based RNA-Seq data analysis
  transcriptomics
• small fixes to Reference-based RNA-Seq data analysis tutorial
  transcriptomics

Reviewed 16 PRs

We love our community reviewing each other's work!

• add GTA 2026 single-cell track
  template-and-tools
• add the SSA link to the Admin topic
  admin
  template-and-tools
  single-cell
• Update ref based tools
  transcriptomics
• Spoc writeathon 2
  template-and-tools
• Fix CYOA of collection split in Ref-based
  transcriptomics

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