Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Contributors

This material was contributed to by:

orcid logoTeresa Müller avatar Teresa Müllerorcid logoMaria Doyle avatar Maria DoyleAnup Kumar avatar Anup Kumarorcid logoErwan Corre avatar Erwan Correorcid logoBérénice Batut avatar Bérénice BatutVerena Moosmann avatar Verena MoosmannElizabeth Humphries avatar Elizabeth HumphriesRobert Meller avatar Robert Mellerorcid logoColine Royaux avatar Coline Royauxorcid logoHelena Rasche avatar Helena RascheEric Tvedte avatar Eric TvedteNatalie Kucher avatar Natalie Kucherorcid logoStéphanie Robin avatar Stéphanie RobinJoachim Wolff avatar Joachim WolffAva Hoffman avatar Ava Hoffmanorcid logoCristóbal Gallardo avatar Cristóbal GallardoMatthias Bernt avatar Matthias BerntSwathi Nataraj avatar Swathi NatarajCandace Savonen avatar Candace SavonenKatherine Cox avatar Katherine Coxorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoClea Siguret avatar Clea SiguretElischa Berger avatar Elischa Bergerorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoNicola Soranzo avatar Nicola SoranzoWilliam Durand avatar William Durandorcid logoLaura Leroi avatar Laura Leroiorcid logoAnne Fouilloux avatar Anne FouillouxFrederick Tan avatar Frederick Tanorcid logoBjörn Grüning avatar Björn GrüningSimon Bray avatar Simon Brayorcid logoCameron Hyde avatar Cameron Hydeorcid logoMateo Boudet avatar Mateo Boudetorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoAnika Erxleben avatar Anika Erxleben

Funding

These individuals or organisations provided funding support for the development of this resource

References