Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Contributors

This material was contributed to by:

Eric Tvedte avatar Eric Tvedteorcid logoCameron Hyde avatar Cameron HydeAnup Kumar avatar Anup KumarCandace Savonen avatar Candace Savonenorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoTeresa Müller avatar Teresa MüllerSimon Bray avatar Simon Brayorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoMaria Doyle avatar Maria DoyleRobert Meller avatar Robert MellerNatalie Kucher avatar Natalie Kucherorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoColine Royaux avatar Coline RoyauxJoachim Wolff avatar Joachim WolffWilliam Durand avatar William Durandorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoLaura Leroi avatar Laura Leroiorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoErwan Corre avatar Erwan Correorcid logoAnthony Bretaudeau avatar Anthony BretaudeauFrederick Tan avatar Frederick Tanorcid logoBjörn Grüning avatar Björn GrüningElizabeth Humphries avatar Elizabeth Humphriesorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoMateo Boudet avatar Mateo BoudetAva Hoffman avatar Ava HoffmanSwathi Nataraj avatar Swathi Natarajorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoDeepti Varshney avatar Deepti VarshneyVerena Moosmann avatar Verena MoosmannElischa Berger avatar Elischa Bergerorcid logoStéphanie Robin avatar Stéphanie RobinKatherine Cox avatar Katherine CoxMatthias Bernt avatar Matthias Berntorcid logoHelena Rasche avatar Helena Rascheorcid logoClea Siguret avatar Clea Siguretorcid logoBérénice Batut avatar Bérénice Batut

Funding

These individuals or organisations provided funding support for the development of this resource

References