Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

orcid logoHelena Rasche avatar Helena RascheNatalie Kucher avatar Natalie Kucherorcid logoCristóbal Gallardo avatar Cristóbal GallardoCandace Savonen avatar Candace Savonenorcid logoBérénice Batut avatar Bérénice Batutorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoClea Siguret avatar Clea SiguretMatthias Bernt avatar Matthias Berntorcid logoMaria Doyle avatar Maria DoyleSimon Bray avatar Simon Brayorcid logoWolfgang Maier avatar Wolfgang MaierRobert Meller avatar Robert Mellerorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoTeresa Müller avatar Teresa MüllerKatherine Cox avatar Katherine Coxorcid logoErwan Corre avatar Erwan Correorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoColine Royaux avatar Coline RoyauxWilliam Durand avatar William DurandElizabeth Humphries avatar Elizabeth Humphriesorcid logoLaura Leroi avatar Laura Leroiorcid logoDeepti Varshney avatar Deepti VarshneyAva Hoffman avatar Ava Hoffmanorcid logoCameron Hyde avatar Cameron Hydeorcid logoMateo Boudet avatar Mateo Boudetorcid logoStéphanie Robin avatar Stéphanie RobinElischa Berger avatar Elischa BergerEric Tvedte avatar Eric Tvedteorcid logoBjörn Grüning avatar Björn Grüningorcid logoAnthony Bretaudeau avatar Anthony BretaudeauAnup Kumar avatar Anup KumarSwathi Nataraj avatar Swathi Natarajorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoNicola Soranzo avatar Nicola SoranzoFrederick Tan avatar Frederick TanVerena Moosmann avatar Verena MoosmannJoachim Wolff avatar Joachim Wolff

Funding

These individuals or organisations provided funding support for the development of this resource

References