Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

Follow topic updates rss-feed with our RSS Feed

Community Resources

Community Home Maintainer Home

Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

orcid logoDeepti Varshney avatar Deepti Varshneyorcid logoBérénice Batut avatar Bérénice Batutorcid logoHelena Rasche avatar Helena Rascheorcid logoErwan Corre avatar Erwan CorreKatherine Cox avatar Katherine Coxorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoWolfgang Maier avatar Wolfgang MaierEric Tvedte avatar Eric TvedteCandace Savonen avatar Candace SavonenAva Hoffman avatar Ava HoffmanAnup Kumar avatar Anup KumarFrederick Tan avatar Frederick TanMatthias Bernt avatar Matthias BerntWilliam Durand avatar William Durandorcid logoMaria Doyle avatar Maria Doyleorcid logoAlexandre Cormier avatar Alexandre CormierElizabeth Humphries avatar Elizabeth Humphriesorcid logoNicola Soranzo avatar Nicola SoranzoSwathi Nataraj avatar Swathi Natarajorcid logoCristóbal Gallardo avatar Cristóbal GallardoNatalie Kucher avatar Natalie Kucherorcid logoAnthony Bretaudeau avatar Anthony BretaudeauJoachim Wolff avatar Joachim WolffVerena Moosmann avatar Verena Moosmannorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoMateo Boudet avatar Mateo Boudetorcid logoTeresa Müller avatar Teresa MüllerSimon Bray avatar Simon BrayRobert Meller avatar Robert Mellerorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoBjörn Grüning avatar Björn Grüningorcid logoClea Siguret avatar Clea Siguretorcid logoColine Royaux avatar Coline Royauxorcid logoLaura Leroi avatar Laura LeroiElischa Berger avatar Elischa Bergerorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoCameron Hyde avatar Cameron Hyde

Funding

These individuals or organisations provided funding support for the development of this resource

References