Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Contributors

This material was contributed to by:

orcid logoLaura Leroi avatar Laura Leroiorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoErwan Corre avatar Erwan Correorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoCameron Hyde avatar Cameron HydeSimon Bray avatar Simon Brayorcid logoMaria Doyle avatar Maria Doyleorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoWolfgang Maier avatar Wolfgang MaierCandace Savonen avatar Candace SavonenKatherine Cox avatar Katherine CoxWilliam Durand avatar William Durandorcid logoMateo Boudet avatar Mateo BoudetAva Hoffman avatar Ava HoffmanVerena Moosmann avatar Verena MoosmannJoachim Wolff avatar Joachim WolffElizabeth Humphries avatar Elizabeth Humphriesorcid logoAnne Fouilloux avatar Anne FouillouxRobert Meller avatar Robert Mellerorcid logoClea Siguret avatar Clea SiguretMatthias Bernt avatar Matthias Berntorcid logoNicola Soranzo avatar Nicola SoranzoFrederick Tan avatar Frederick TanNatalie Kucher avatar Natalie Kucherorcid logoTeresa Müller avatar Teresa MüllerSwathi Nataraj avatar Swathi Natarajorcid logoDeepti Varshney avatar Deepti VarshneyEric Tvedte avatar Eric Tvedteorcid logoSaskia Hiltemann avatar Saskia HiltemannElischa Berger avatar Elischa Bergerorcid logoHelena Rasche avatar Helena Rascheorcid logoColine Royaux avatar Coline Royauxorcid logoBjörn Grüning avatar Björn Grüningorcid logoBérénice Batut avatar Bérénice BatutAnup Kumar avatar Anup Kumar

Funding

These individuals or organisations provided funding support for the development of this resource

References