Sequence Analysis — Editorial Board Home

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Editorial Board

Bérénice Batut Yvan Le Bras Joachim Wolff

Action Items

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Review open Pull Requests	Ongoing 🔁	View all open PRs in the Sequence Analysis topic and review, comment and merge!
Review open GitHub Issues	Ongoing 🔁	View all open issues related to the Sequence Analysis topic and comment, fix, or ask others for help!

Topic Materials

Material	Contributions v2 help	Pre-requisites help	Follow up trainings	Data on Zenodo	Notebook	Server Compatibility
Mapping	✅	✅	✅	✅		View
Quality Control	✅		✅	✅		View
Clean and manage Sanger sequences from raw files to aligned consensus	❌			✅		View
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants	✅			✅		View
NCBI BLAST+ against the MAdLand	✅			✅		View
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes	✅			✅		View
Quality and contamination control in bacterial isolate using Illumina MiSeq Data	✅			✅		View
Removal of human reads from SARS-CoV-2 sequencing data	❌	✅		✅		View
SARS-CoV-2 Viral Sample Alignment and Variant Visualization	✅			✅		View
Screening assembled genomes for contamination using NCBI FCS	✅			✅		View

Topic Workflows

Material	Workflow	Updated	Version	Tests	Reports	Comments
Mapping	GTN tutorial: mapping	Oct 2, 2026	6	✅	✅	❌
Quality Control	GTN - Sequence Analyses - Quality Control (imported from uploaded file)	Oct 2, 2026	5	✅	❌	❌
Clean and manage Sanger sequences from raw files to aligned consensus	Sanger1 : From AB1 to aligned consensus and primers fasta + BLAST	Oct 2, 2026	1	✅	❌	❌
Clean and manage Sanger sequences from raw files to aligned consensus	Training Sanger sequences CHD8	Oct 2, 2026	1	✅	❌	❌
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants	Identification and Evolutionary Analysis of Transcription-Associated Proteins	Oct 2, 2026	1	❌	✅	❌
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes	Primer design of a virus family (imported from uploaded file)	Oct 2, 2026	1	✅	✅	❌
Quality and contamination control in bacterial isolate using Illumina MiSeq Data	Quality and contamination control in bacterial isolate using Illumina MiSeq Data	Oct 2, 2026	1	✅	✅	❌
Removal of human reads from SARS-CoV-2 sequencing data	GTN - Sequence Analyses - Removal of human reads from SARS-CoV-2 sequencing data	Oct 2, 2026	1	❌	❌	❌
Screening assembled genomes for contamination using NCBI FCS	NCBI Foreign Contamination Screen	Oct 2, 2026	1	✅	❌	❌

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TODO once this is merged: https://github.com/galaxyproject/training-material/pull/4963

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