Anne Fouilloux
Contributions
The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
1 Editorial Role
This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.
- Topic: Earth Data science
30 Tutorials
- Sequence analysis / Quality Control π§
- Using Galaxy and Managing your Data / JupyterLab in Galaxy βοΈ π§
- Earth Data science / Getting your hands-on climate data βοΈ π§
- Earth Data science / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) βοΈ π§
- Earth Data science / Collaboration with JupyterGIS βοΈ π§
- Earth Data science / Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools βοΈ π§
- Earth Data science / Pangeo Notebook in Galaxy - Introduction to Xarray βοΈ π§
- Earth Data science / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Galaxy Climate JupyterLab βοΈ π§
- Earth Data science / Visualize Climate data with Panoply netCDF viewer βοΈ π§
- Imaging / Using BioImage.IO models for image analysis in Galaxy βοΈ π§
- Imaging / Nucleoli segmentation and feature extraction using CellProfiler π§
- Imaging / Voronoi segmentation βοΈ
- Imaging / Object tracking using CellProfiler βοΈ
- Ecology / Metabarcoding/eDNA through Obitools π§
- Ecology / Visualize EBV cube data with Panoply netCDF viewer βοΈ
- Introduction to Galaxy Analyses / How to reproduce published Galaxy analyses βοΈ
- Introduction to Galaxy Analyses / Galaxy Basics for everyone βοΈ π§
- Galaxy Server administration / Use Apptainer containers for running Galaxy jobs π§
- Galaxy Server administration / Galaxy Monitoring with gxadmin π§
- Transcriptomics / RNA Seq Counts to Viz in R π§
12 Slides
- Assembly / De Bruijn Graph Assembly π§
- Earth Data science / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) βοΈ π§
- Earth Data science / Pangeo ecosystem 101 for everyone βοΈ π§
- Earth Data science / The Pangeo ecosystem βοΈ π§
- Earth Data science / Introduction to climate data βοΈ π§
-
Imaging
/
Nucleoli Segmentation
&
Feature Extraction
using CellProfiler π§ - Introduction to Galaxy Analyses / Introduction to Galaxy βοΈ π§
8 FAQs
- Ergebnisse kΓΆnnen variieren βοΈ
- Results may vary
- Los resultados pueden variar βοΈ
- I risultati possono variare βοΈ
- Detecting the datatype (file format)
- Find all Histories and purge (aka permanently delete)
- Launch JupyterLab
- Opening the workflow editor
11 Video Recordings
- Earth Data science / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) π¬
- Using Galaxy and Managing your Data / Using dataset collections π¬
- Earth Data science / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) π£
- Earth Data science / Collaboration with JupyterGIS π¬ π£
- Earth Data science / Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools π¬ π£
- Earth Data science / Pangeo Notebook in Galaxy - Introduction to Xarray π¬ π£
- Introduction to Galaxy Analyses / Galaxy Basics for everyone π£
- Foundations of Data Science / R basics in Galaxy π¬
2 Events
- Galaxy Training Academy 2025 π§βπ«
- Galaxy Training Academy 2026 π§βπ«
Your Contributor Card
orcid Anne Fouilloux
Editorial board member for Earth Data science
30 Tutorials 12 Slides 11 Videos 8 FAQs 2 Events Editorial Board
GTN contributor since 2019-07
GitHub Activity
github Issues Reported
23 Merged Pull Requests
See all of the github Pull Requests and github Commits by Anne Fouilloux.
-
Imaging: add an Earth Observation path to the BioImage.IO models tutorial
imaging -
Imaging: add an Earth Observation path to the CellProfiler object-tracking tutorial
imaging -
Voronoi Segmentation for different scientific disciplines (bioimaging & Earth Observation)
imaging -
add subtopics for climate
climate -
fix Getting your hands on climate
climate
Reviewed 42 PRs
We love our community reviewing each other's work!
-
Imaging: add an Earth Observation path to the BioImage.IO models tutorial
imaging -
Added note regarding the timeseries plot
climate -
[Google Form] New Recording Submission! - Collaboration with JupyterGIS - annefou
climateGTA -
Event page gta added Climat track
template-and-tools -
JupyterGIS collaborative features tutorial
template-and-toolsclimate
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