We are proud to announce that, as result of the collaboration with the Vertebrate Genomes Project (VGP), a new training describing the VGP assembly pipeline is now available in the Galaxy Training Network. The Vertebrate Genomes Project aims to generate high-quality, near-error-free, gap-free, chromosome-level, haplotype-phased, annotated reference genome assemblies for every vertebrate species.
Full StoryAlex Ostrovsky
Contributions
The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
GitHub Activity
Tutorials
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Assembly
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Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
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Assembly
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Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
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Development in Galaxy
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Creating Galaxy tools from Conda Through Deployment
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Single Cell
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Downstream Single-cell RNA analysis with RaceID
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Variant Analysis
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Calling variants in non-diploid systems
Slides
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Single Cell
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Dealing with Cross-Contamination in Fixed Barcode Protocols
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Single Cell
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Plates, Batches, and Barcodes
Video Recordings
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Development in Galaxy
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Creating Galaxy tools from Conda Through Deployment
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Introduction to Galaxy Analyses
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Galaxy Basics for everyone
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News
14 March 2022
new tutorial
assembly
pacbio
vgp
14 March 2022
new tutorial
assembly
pacbio
vgp
External Links
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