Amirhossein Naghsh Nilchi
Affiliations
UFR
ELIXIR Europe
🖖🏾SPOCContributions
The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
1 Editorial Role
This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.
- Topic: Single Cell
19 Tutorials
- Single Cell / Spatial transcriptomics analysis of a primary dermal melanoma section from Xenium 📝 🧐
- Single Cell / Clustering 3K PBMCs with Scanpy 🧐
- Single Cell / Filter, plot and explore single-cell RNA-seq data with Scanpy 🖥
- Proteomics / MaxQuant and MSstats for the analysis of label-free data 🧐
- Statistics and Machine Learning / Modeling Breast Cancer Subtypes with Flexynesis ✍️ 🧐
- Statistics and Machine Learning / Prepare Data from CbioPortal for Flexynesis Integration ✍️ 🧐
- Statistics and Machine Learning / Unsupervised Analysis of Bone Marrow Cells with Flexynesis ✍️ 🧐
- Statistics and Machine Learning / Comparing ligand-binding site predictions across different protein structure modalities using SIMORGH ✍️ 🧐
- Statistics and Machine Learning / Identifing Survival Markers of Brain tumor with Flexynesis ✍️ 🧐
- Galaxy Server Administration / Galaxy Installation on Kubernetes 🧐
- Contributing to the Galaxy Training Material / FAIR-by-Design methodology 🧐
- Epigenetics / Formation of the Super-Structures on the Inactive X 🧐
- Transcriptomics / Reference-based RNA-Seq data analysis 🧐
8 Slides
- Assembly / Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads 🧐
- Proteomics / Introduction to proteomics, protein identification, quantification and statistical modelling 🧐
- Development in Galaxy / Architecture 16 - Galaxy Testing 🧐
- Development in Galaxy / Architecture 15 - Galaxy Production Deployment 🧐
- Using Galaxy and Managing your Data / Submitting SARS-CoV-2 sequences to ENA 🧐
- Galaxy Server Administration / Connecting Galaxy to a compute cluster 🧐
- Galaxy Server Administration / Galaxy from an administrator's point of view 🧐
- Galaxy Server Administration / Galaxy Administrator Time Burden and Technology Usage 🧐
2 Video Recordings
7 Events
- Workshop on high-throughput sequencing data analysis with Galaxy 🧑🏫
- Workshop on high-throughput sequencing data analysis with Galaxy 🧑🏫
- Galaxy Training Academy 2025 🧑🏫
- From data to discovery - Galaxy workshop at University of Graz 🧑🏫
- Workshop on high-throughput sequencing data analysis with Galaxy 🧑🏫
- Galaxy Training Academy 2026 🧑🏫
- Workshop on high-throughput sequencing data analysis with Galaxy 🧑🏫
Your Contributor Card
orcid Amirhossein Naghsh Nilchi
Editorial board member for Single Cell
19 Tutorials 8 Slides 7 Events 2 Videos Editorial Board
GTN contributor since 2024-07
GitHub Activity github Issues Reported
GTN contributor since 2024-07
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