Enis Afgan

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

11 Tutorials

• Assembly / Unicycler Assembly 🧐
• Galaxy Server administration / Reference Data with Data Managers ✍️
• Galaxy Server administration / Mapping Jobs to Destinations using TPV 📝 🧐
• Galaxy Server administration / Running Jobs on Remote Resources with Pulsar 🧐
• Galaxy Server administration / Managing Galaxy on Kubernetes ✍️ 🧐
• Galaxy Server administration / Galaxy Installation on Kubernetes ✍️ 🧐
• Statistics and machine learning / Deep Learning (Part 2) - Recurrent neural networks (RNN) 🧐
• Imaging / Quantitative Analysis of Histological Staining Using Color Deconvolution 🧐

1 Slide

• Using Galaxy and Managing your Data / Galaxy workflows in Dockstore ✍️

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GitHub Activity

github Issues Reported

5 Merged Pull Requests

See all of the github Pull Requests and github Commits by Enis Afgan.

• Minor clarifications and consistency improvements for the ML RNN tutorial
  statistics
• Fix a couple of typos
• Update Kubernetes tutorials per workshop participant feedback; format for consistency
  admin
• Add two tutorials on using Kubernetes with Galaxy
  admin
• Update RNA-based tutorial tool

Reviewed 6 PRs

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• New tutorial: Quantitative Analysis of Histological Staining Using Color Deconvolution
  imaging
• Fixed the extra WF step. Fixed instructions in model prediction
  statistics
• Update GAT tutorial on mapping jobs to destinations using TPV
  admin
• Updated prokka workflow to newest tool versions
• modernized upload of data

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