Metabolomics

Training material to analyse Mass spectrometry data in Galaxy: Metabolomics (LCMS, FIAMS, GCMS, NMR) and imaging.

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.
Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Metabolomics
Mass spectrometry imaging: Examining the spatial distribution of analytes
Mass spectrometry imaging: Finding differential analytes
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)
Mass spectrometry: LC-MS analysis
Mass spectrometry: LC-MS data processing
Mass spectrometry: LC-MS preprocessing with XCMS
Molecular formula assignment and mass recalibration with MFAssignR package
Predicting EI+ mass spectra with QCxMS

Frequently Asked Questions

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le CorguilléMélanie Petera avatar Mélanie Peteraorcid logoMelanie Föll avatar Melanie Föll

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Contributors

This material was contributed to by:

orcid logoMatej Troják avatar Matej TrojákCécile Canlet avatar Cécile Canletorcid logoMelanie Föll avatar Melanie Föllorcid logoMaxim Skoryk avatar Maxim SkorykMélanie Petera avatar Mélanie Peteraorcid logoSaskia Hiltemann avatar Saskia HiltemannWorkflow4Metabolomics core team avatar Workflow4Metabolomics core teamJulien Saint-Vanne avatar Julien Saint-VanneMaren Stillger avatar Maren StillgerYann Guitton avatar Yann Guittonorcid logoKristina Gomoryova avatar Kristina GomoryovaGildas Le Corguillé avatar Gildas Le Corguilléorcid logoBjörn Grüning avatar Björn Grüningorcid logoHelge Hecht avatar Helge Hechtorcid logoHelena Rasche avatar Helena Rascheorcid logoBérénice Batut avatar Bérénice Batutorcid logoJulia Jakiela avatar Julia JakielaSimon Bray avatar Simon BraySimeon Schum avatar Simeon SchumJean-François Martin avatar Jean-François Martin

Funding

These individuals or organisations provided funding support for the development of this resource

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UFR
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ELIXIR Europe