Metabolomics

Training material to analyse Mass spectrometry data in Galaxy: Metabolomics (LCMS, FIAMS, GCMS, NMR) and imaging.

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.
Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Metabolomics
Mass spectrometry imaging: Examining the spatial distribution of analytes
Mass spectrometry imaging: Finding differential analytes
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)
Mass spectrometry: LC-MS analysis
Mass spectrometry: LC-MS data processing
Mass spectrometry: LC-MS preprocessing with XCMS
Molecular formula assignment and mass recalibration with MFAssignR package
Predicting EI+ mass spectra with QCxMS

Frequently Asked Questions

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le CorguilléMélanie Petera avatar Mélanie Peteraorcid logoMelanie Föll avatar Melanie Föll

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Contributors

This material was contributed to by:

Gildas Le Corguillé avatar Gildas Le CorguilléSimeon Schum avatar Simeon SchumJulien Saint-Vanne avatar Julien Saint-VanneSimon Bray avatar Simon Brayorcid logoSaskia Hiltemann avatar Saskia HiltemannMélanie Petera avatar Mélanie Peteraorcid logoMelanie Föll avatar Melanie FöllYann Guitton avatar Yann Guittonorcid logoMaxim Skoryk avatar Maxim SkorykWorkflow4Metabolomics core team avatar Workflow4Metabolomics core teamJean-François Martin avatar Jean-François MartinMaren Stillger avatar Maren Stillgerorcid logoBjörn Grüning avatar Björn Grüningorcid logoHelge Hecht avatar Helge Hechtorcid logoBérénice Batut avatar Bérénice Batutorcid logoKristina Gomoryova avatar Kristina Gomoryovaorcid logoHelena Rasche avatar Helena Rascheorcid logoJulia Jakiela avatar Julia JakielaCécile Canlet avatar Cécile Canletorcid logoMatej Troják avatar Matej Troják

Funding

These individuals or organisations provided funding support for the development of this resource

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UFR
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ELIXIR Europe