Metabolomics

Training material to analyse Mass spectrometry data in Galaxy: Metabolomics (LCMS, FIAMS, GCMS, NMR) and imaging.

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.
Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Metabolomics
Mass spectrometry imaging: Examining the spatial distribution of analytes
Mass spectrometry imaging: Finding differential analytes
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)
Mass spectrometry: LC-MS analysis
Mass spectrometry: LC-MS data processing
Mass spectrometry: LC-MS preprocessing with XCMS
Predicting EI+ mass spectra with QCxMS

Frequently Asked Questions

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le CorguilléMélanie Petera avatar Mélanie Peteraorcid logoMelanie Föll avatar Melanie Föll

Contributors

This material was contributed to by:

Julien Saint-Vanne avatar Julien Saint-Vanneorcid logoBjörn Grüning avatar Björn Grüningorcid logoMatej Troják avatar Matej Trojákorcid logoHelge Hecht avatar Helge HechtYann Guitton avatar Yann GuittonSimon Bray avatar Simon BrayGildas Le Corguillé avatar Gildas Le Corguilléorcid logoJulia Jakiela avatar Julia JakielaWorkflow4Metabolomics core team avatar Workflow4Metabolomics core teamMaren Stillger avatar Maren StillgerCécile Canlet avatar Cécile Canletorcid logoBérénice Batut avatar Bérénice Batutorcid logoMaxim Skoryk avatar Maxim Skorykorcid logoHelena Rasche avatar Helena RascheMélanie Petera avatar Mélanie Peteraorcid logoMelanie Föll avatar Melanie FöllJean-François Martin avatar Jean-François Martinorcid logoSaskia Hiltemann avatar Saskia Hiltemann

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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UFR