Imaging — Editorial Board Home

This is a new, experimental "Editorial Board Home" for a given topic. It is intended to provide a single place for maintainers and editorial board members to find out key information about their topic and identify action items.

Editorial Board

Leonid Kostrykin Beatriz Serrano-Solano

Action Items

Item	Status	Why you should do this
Summary	Done ✅	Provide a sufficiently detailed summary of the topic to let learners know what they're learning about in this topic.
Sufficient Editorial Board Members	More required ❌	Having multiple people sharing the burden of being responsible for a specific topic can reduce board member burn-out in the long term.
Enable Subtopics	Pending ❌	Subtopics help organize the content and make it easier to navigate.
Annotate Funders	Done ✅ (4 funders)	By annotating the funders of your topic's materials, you make it easier to write your grant reports later
Learning Pathway CTA	Pending ❌	By providing a Learning Pathway CTA, we can help guide learners to the best resources for learning about this topic.

Topic Materials

Material	Contributions v2 help	Pre-requisites help	Follow up trainings	Data on Zenodo	Notebook	Server Compatibility
Analyse HeLa fluorescence siRNA screen	✅	✅	✅	✅	❌	View
End-to-End Tissue Microarray Image Analysis with Galaxy-ME	✅	❌	❌	✅	❌	View
Introduction to Image Analysis using Galaxy	✅	❌	✅	✅	❌	View
Nucleoli segmentation and feature extraction using CellProfiler	✅	❌	❌	❌	❌	View
Object tracking using CellProfiler	✅	✅	❌	✅	❌	View
Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy	✅	❌	❌	✅	❌	View
Tracking of mitochondria and capturing mitoflashes	✅	❌	❌	✅	❌	View
FAIR Bioimage Metadata	✅	✅	✅	❌	❌	View
REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data	✅	✅	✅	❌	❌	View

Topic Workflows

Material	Workflow	Updated	Version	Tests	Reports	Comments
Analyse HeLa fluorescence siRNA screen	analyze_screen	Mar 11, 2025	6	✅	❌	❌
Analyse HeLa fluorescence siRNA screen	feature_extraction	Mar 11, 2025	6	✅	❌	❌
End-to-End Tissue Microarray Image Analysis with Galaxy-ME	GTN_Exemplar_002_TMA_workflow	Mar 11, 2025	1	❌	❌	❌
Introduction to Image Analysis using Galaxy	Workflow constructed from Tutorial 'Introduction to Image Analysis using Galaxy'	Mar 11, 2025	6	✅	❌	❌
Nucleoli segmentation and feature extraction using CellProfiler	CP_pipeline_IDR_training	Mar 11, 2025	3	❌	❌	❌
Object tracking using CellProfiler	CP_object_tracking_example	Mar 11, 2025	1	❌	❌	❌
Tracking of mitochondria and capturing mitoflashes	Capturing mitoflashes	Mar 11, 2025	1	✅	✅	❌

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TODO once this is merged: https://github.com/galaxyproject/training-material/pull/4963

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