Assembly
Learn all about Genome assembly. Start with the tutorial at your own pace. If you need support contact us via the Slack Channel gta_assembly.
| Organiser(s) |
 
Delphine Lariviere
|
| Instructor(s) |
Anna Syme
Björn Grüning
Clea Siguret
Delphine Lariviere
Gareth Price
Igor Makunin
Michael Schatz
Saim Momin
Nguyen Vo Minh Trung
|
Need help with these tutorials?
Open Slack support channel for this track: comment #gta_assemblyIntroduction
In this section, we will introduce what a genome assembly is, how it works, and the metrics to evaluate the quality of an assembly. Warning: The QC training uses large data. For a lighter, faster version, follow the video and only use the sponge data
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
| ERGA post-assembly QC | |||
Genome Assembly
In this section, we will present genome assemblies for different types of organisms.
Non-nuclear genome assembly
When sequencing organisms with non-nuclear DNA, the data contain sequencing for both nuclear and non-nuclear DNA. In this section we will learn how to assemble organelles genome.
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
| Assembly of the mitochondrial genome from PacBio HiFi reads | |||
| Chloroplast genome assembly |
Assembly decontamination
In this section we will learn how remove sequences that do not belong to the organism you want to sequence.
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
| Decontamination of a genome assembly |