Machine Learning

This module will introduce you to the world of machine learning using Galaxy. Start with the tutorial at your own pace. If you need support contact us via the Slack Channel gta_machine-learning. 🚨 Unfortunately, the French Galaxy server is not supporting the Galaxy machine learning tools at the moment. Please choose one of the other Galaxy instances (US, EU, AU) to follow this training. The tutorial ‘Fine tune large protein model (ProtTrans) using HuggingFace’ currently works on the Galaxy EU server and the tutorial ‘Building the LORIS LLR6 PanCancer Model Using PyCaret’ currently works only on the US Galaxy server.

Organiser(s) Anup Kumar avatar Anup Kumar
Instructor(s) orcid logoAnna Syme avatar Anna SymeAnup Kumar avatar Anup KumarEmmanuel Augustine avatar Emmanuel AugustineIgor Makunin avatar Igor Makuninorcid logoJennifer Hillman-Jackson avatar Jennifer Hillman-JacksonMeltem Kutnu avatar Meltem Kutnuorcid logoMichelle Terese Savage avatar Michelle Terese Savageorcid logoPaulo Cilas Morais Lyra Junior avatar Paulo Cilas Morais Lyra JuniorReyhaneh Tavakoli avatar Reyhaneh Tavakoli

Need help with these tutorials?

Open Slack support channel for this track:   #gta_machine-learning

Machine Learning

If you encounter any issue please ask us in the above Slack channel.

Lesson Slides Hands-on Recordings
Basics of machine learning
Regression in Machine Learning
Classification in Machine Learning
Deep Learning (Part 1) - Feedforward neural networks (FNN)
Deep Learning (Part 2) - Recurrent neural networks (RNN)
Deep Learning (Part 3) - Convolutional neural networks (CNN)
Fine tune large protein model (ProtTrans) using HuggingFace
interactive-tools machine-learning deep-learning jupyter-lab fine-tuning dephosphorylation-site-prediction
Building the LORIS LLR6 PanCancer Model Using PyCaret
LORIS Score Model Machine Learning PyCaret