Extract dataset:
__EXTRACT_DATASET__
Metadata
Links
EDAM Operations
Observed Tool Versions
Within GTN tutorials
Relevant Tutorials
- Assembly / ERGA post-assembly QC
- Assembly / Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
- Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES)
- Climate / Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools
- Epigenetics / CUT&RUN data analysis
- Genome Annotation / Essential genes detection with Transposon insertion sequencing
- Imaging / Quantification of single-molecule RNA fluorescence in situ hybridization (smFISH) in yeast cell lines
- Imaging / Execute a BiaPy workflow in Galaxy
- Imaging / Quantification of electrophoresis gel bands using QuPath and Galaxy imaging tools
- Imaging / Content Tracking and Verification in Galaxy Workflows with ISCC-SUM
- Imaging / Using BioImage.IO models for image analysis in Galaxy
- Microbiome / Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
- Single Cell / Pseudobulk Analysis with Decoupler and EdgeR
- Single Cell / Multi-sample batch correction with Harmony and SnapATAC2
- Statistics and machine learning / Prepare Data from CbioPortal for Flexynesis Integration
- Statistics and machine learning / Modeling Breast Cancer Subtypes with Flexynesis
- Statistics and machine learning / Identifing Survival Markers of Brain tumor with Flexynesis
- Statistics and machine learning / Unsupervised Analysis of Bone Marrow Cells with Flexynesis
- Transcriptomics / Pathway analysis with the MINERVA Platform
- Transcriptomics / Reference-based RNA-Seq data analysis
- Variant Analysis / Somatic Variant Discovery from WES Data Using Control-FREEC