Manipulate AnnData: object
toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.13.3+galaxy0
Metadata
Links
Observed Tool Versions
Within GTN tutorials
0.13.3+galaxy0
0.11.4+galaxy3
0.10.9+galaxy1
0.10.9+galaxy0
0.10.3+galaxy0
0.7.5+galaxy1
Relevant Tutorials
- Single Cell / Pseudobulk Analysis with Decoupler and EdgeR
- Single Cell / Multi-sample batch correction with Harmony and SnapATAC2
- Single Cell / Single-cell ATAC-seq standard processing with SnapATAC2
- Single Cell / Generating a single cell matrix using Alevin
- Single Cell / Combining single cell datasets after pre-processing
- Single Cell / Filter, plot and explore single-cell RNA-seq data with Scanpy
- Single Cell / Removing the effects of the cell cycle
- Single Cell / Inferring single cell trajectories with Scanpy
- Single Cell / Converting NCBI Data to the AnnData Format
- Single Cell / Analysis of plant scRNA-Seq Data with Scanpy
- Single Cell / Clustering 3K PBMCs with Scanpy
- Single Cell / Spatial transcriptomics analysis of a primary dermal melanoma section from Xenium