MultiQC: aggregate results from bioinformatics analyses into a single report

Metadata

Servers Offering this Tool

UseGalaxy.eu (1.9+galaxy1)

This is a guess, we are not currently checking if that is actually present.

Observed Tool Versions

Within GTN tutorials

• 1.9+galaxy1
• 1.9
• 1.8+galaxy1
• 1.8+galaxy0
• 1.7
• 1.6
• 1.5.0
• 1.2.0
• 1.11+galaxy1
• 1.11+galaxy0

EDAM Operations

EDAM Topics

Relevant Tutorials

• Assembly / Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
• Assembly / An Introduction to Genome Assembly
• Assembly / Large genome assembly and polishing
• Assembly / Unicycler Assembly
• Contributing to the Galaxy Training Material / Creating content in Markdown
• Ecology / RAD-Seq Reference-based data analysis
• Genome Annotation / CRISPR screen analysis
• Introduction to Galaxy Analyses / NGS data logistics
• Introduction to Galaxy Analyses / Very Short Introductions: QC
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short)
• Microbiome / 16S Microbial analysis with Nanopore data
• Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• Sequence analysis / Mapping
• Sequence analysis / Quality Control
• Single Cell / Pre-processing of Single-Cell RNA Data
• Single Cell / Pre-processing of 10X Single-Cell RNA Datasets
• Transcriptomics / Genome-wide alternative splicing analysis
• Transcriptomics / De novo transcriptome assembly, annotation, and differential expression analysis
• Transcriptomics / Pathway analysis with the MINERVA Platform
• Transcriptomics / Whole transcriptome analysis of Arabidopsis thaliana
• Transcriptomics / Reference-based RNA-Seq data analysis
• Transcriptomics / 1: RNA-Seq reads to counts
• Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease
• Variant Analysis / From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
• Variant Analysis / Somatic Variant Discovery from WES Data Using Control-FREEC
• Variant Analysis / Identification of somatic and germline variants from tumor and normal sample pairs
• Variant Analysis / M. tuberculosis Variant Analysis