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Metadata

Servers Offering this Tool

UseGalaxy.eu (upload1)

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Observed Tool Versions

Within GTN tutorials

• upload1

Relevant Tutorials

• Assembly / Chloroplast genome assembly
• Assembly / Making sense of a newly assembled genome
• Assembly / Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• Assembly / Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• Contributing to the Galaxy Training Material / Creating content in Markdown
• Foundations of Data Science / Data Manipulation Olympics
• Ecology / Checking expected species and contamination in bacterial isolate
• Evolution / Tree thinking for tuberculosis evolution and epidemiology
• Evolution / Identifying tuberculosis transmission links: from SNPs to transmission clusters
• Using Galaxy and Managing your Data / Workflow Reports
• Genome Annotation / Identification of AMR genes in an assembled bacterial genome
• Genome Annotation / Bacterial Genome Annotation
• Introduction to Galaxy Analyses / Data Manipulation Olympics
• Introduction to Galaxy Analyses / Galaxy Basics for genomics
• Introduction to Galaxy Analyses / Galaxy Basics for everyone
• Introduction to Galaxy Analyses / From peaks to genes
• Introduction to Galaxy Analyses / How to reproduce published Galaxy analyses
• Sequence analysis / Quality and contamination control in bacterial isolate using Illumina MiSeq Data
• Variant Analysis / Avian influenza viral strain analysis from gene segment sequencing data
• Variant Analysis / Pox virus genome analysis from tiled-amplicon sequencing data
• Variant Analysis / Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
• Variant Analysis / M. tuberculosis Variant Analysis
• Visualisation / Visualisation with Circos