Leonid Kostrykin

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Topic: Imaging

Tutorials

• Imaging / Analyse HeLa fluorescence siRNA screen ✍️ 🧐
• Imaging / Introduction to Image Analysis using Galaxy ✍️ 🧐
• Imaging / Quantification of single-molecule RNA fluorescence in situ hybridization (smFISH) in yeast cell lines 🧐
• Imaging / Tracking of mitochondria and capturing mitoflashes ✍️ 🧐
• Imaging / Voronoi segmentation ✍️ 🧐
• Imaging / Parameter tuning and optimization - Evaluating nuclei segmentation with Galaxy 🧐
• Imaging / Training Custom YOLO Models for Segmentation of Bioimages 🧐
• Imaging / End-to-End Tissue Microarray Image Analysis with Galaxy-ME 🧐
• Imaging / Using BioImage.IO models for image analysis in Galaxy ✍️ 📝 🧐
• Imaging / Quantification of electrophoresis gel bands using QuPath and Galaxy imaging tools 🧐

GitHub Activity

github Issues Reported

11 Merged Pull Requests

See all of the github Pull Requests and github Commits by Leonid Kostrykin.

• Update tutorial: Using BioImage.IO models for image analysis in Galaxy
  imaging
• Update tutorial: Using BioImage.IO models for image analysis in Galaxy
  imaging
• Introduction to Image Analysis using Galaxy: Fix explanations about 16bit images
  imaging
• Detection of Mitoflashes: Fix citation in tutorial
  imaging
• [BHEU2024] Fix last section of the `hela-screen-analysis` tutorial
  imaging

Reviewed 18 PRs

We love our community reviewing each other's work!

• Text updates based on feedback for YOLO training tutorial
  template-and-tools
  imaging
• new yolo training tutorial
  template-and-tools
  imaging
• corrected sky images path in voronoi segmentation tutorial.md
  imaging
• added voronoi segmentation for astronomy info
  imaging
• Auto Compress Images

News

External Links

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