Mallory Freeberg

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Tutorials

• Epigenetics / Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1) ✍️ 🧐
• Proteomics / metaQuantome 1: Data creation 🧐
• Proteomics / metaQuantome 2: Function 🧐
• Proteomics / metaQuantome 3: Taxonomy 🧐
• Transcriptomics / Differential abundance testing of small RNAs ✍️ 🧐
• Transcriptomics / De novo transcriptome reconstruction with RNA-Seq ✍️ 🧐
• Transcriptomics / Reference-based RNA-Seq data analysis ✍️
• Transcriptomics / Visualization of RNA-Seq results with CummeRbund 🧐

Slides

• Climate / Introduction to climate data 🧐
• Transcriptomics / Visualization of RNA-Seq results with CummeRbund 🧐

FAQs

• I get a different number of transcripts with a significant change in gene expression between the G1E and megakaryocyte cellular states. Why?

Video Recordings

• Transcriptomics / De novo transcriptome reconstruction with RNA-Seq 💬 🗣

GitHub Activity

github Issues Reported

18 Merged Pull Requests

See all of the github Pull Requests and github Commits by Mallory Freeberg.

• Replace screenshots and add workflow test to non-diploid tutorial
• Add workflow test for Galaxy 101 for Everyone tutorial
  paper-cut
• Add workflow test for Short Intro to Galaxy tutorial
  paper-cut
• Add workflow test for Genome annotation with Prokka tutorial
  paper-cut
• Add Peaks2Genes workflow

Reviewed 12 PRs

We love our community reviewing each other's work!

• Created Metaquantome Function and Taxonomy GTN
• Added workflow test for metaquantome data creation tutorial
• metaQuantome tutorial: part I
  proteomics
  new tutorial
  new contributor(s)
• General intro to climate data fix #2042
• TAL1 tutorial updates
  improvement

External Links

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