Marie Josse

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Topic: Climate
• Topic: Ecology
• Learning Pathway: Discovering Galaxy through climate analysis
• Learning Pathway: Tool development for a nice & shiny subdomain

Tutorials

• FAIR Data, Workflows, and Research / Exporting Workflow Run RO-Crates from Galaxy 📝 🧐
• Ecology / Object detection with YOLO ⚙️ 🧐
• Ecology / QGIS Web Feature Services ✍️ 🧐
• Ecology / Biodiversity data exploration ✍️
• Ecology / Visualize EBV cube data with Panoply netCDF viewer ✍️ 🧐
• Ecology / Life Traits Ecoregionalization workflow 🧐
• Ecology / RAD-Seq to construct genetic maps 🧐
• Ecology / Marine Omics identifying biosynthetic gene clusters ✍️
• Ecology / Metabarcoding/eDNA through Obitools 🧐
• Ecology / Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities 🧐
• Ecology / Taxonomic Analysis of eDNA 🧐
• Ecology / Cleaning GBIF data using OpenRefine 🧐
• Ecology / Phylodiversity analysis quick tutorial 🧐
• Ecology / Ecoregionalization workflow tutorial ⚙️
• Ecology / RAD-Seq Reference-based data analysis 🧐
• Ecology / Sentinel 2 biodiversity ✍️
• Ecology / Compute and analyze biodiversity metrics with PAMPA toolsuite 🧐
• Ecology / From NDVI data with OpenEO to time series visualisation with Holoviews ✍️ 🧐
• Ecology / Regional GAM 🧐
• Ecology / Data submission using ENA upload Tool 🧐
• Ecology / Species distribution modeling 🧐
• Ecology / RAD-Seq de-novo data analysis 🧐
• Ecology / Champs blocs indicators ✍️ 🧐
• Ecology / Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS 🧐
• Ecology / SAM3 – AI-based Semantic Segmentation of marine biodiversity Images and Videos 🧐
• Ecology / Obis marine indicators ✍️ 🧐
• Development in Galaxy / Galaxy Interactive Tools ✍️ 🧐
• Galaxy Server administration / Adding file-sources to Galaxy ✍️
• Galaxy Server administration / Create a subdomain for your community on UseGalaxy.eu ✍️ 🧐
• Climate / Nitrate DMQC for autonomous platforms such as Argo floats ✍️ 🧐
• Climate / Ocean's variables study ✍️ 🧐
• Climate / Ocean Data View (ODV) ✍️ 🧐
• Climate / Getting your hands-on earth data ✍️ 🧐
• Climate / Analyse Argo data ✍️ 🧐
• Climate / Sentinel 5P data visualisation ✍️
• Galaxy Community Building / Creation of the labs in the different Galaxy instances for your community 🧐
• Galaxy Community Building / Creation of resources listing all the tools and their metadata relevant to your community 🧐
• Galaxy Community Building / Creation of resources listing Galaxy workflow for your community 🧐
• Galaxy Community Building / Make your tools available on your subdomain ✍️ 🧐
• Galaxy Community Building / Creation of a Galaxy tutorial table for your community 🧐
• Contributing to the Galaxy Training Material / Tools, Data, and Workflows for tutorials 🧐
• Ecology / Production d'indicateurs champs de bloc ✍️
• Ecology / SAM3 – Segmentation sémantique d'images et de vidéos via IA 🧐

Slides

• FAIR Data, Workflows, and Research / An earth-system RO-Crate ✍️

FAQs

• Creating a dataset collection with autobuild
• Running a workflow

Events

• Galaxy Beyond Basics: Mastering Workflows, Automation, and Scalability 🎪 🧑‍🏫

GitHub Activity

github Issues Reported

30 Merged Pull Requests

See all of the github Pull Requests and github Commits by Marie Josse.

• add letter a-e in text
  faqs
• Review community tuto
• Qcv analysis update
  template-and-tools
  climate
  faqs
• Add new earth system tuto on ocean
  climate
• Add first file-source tutorial
  admin

Reviewed 21 PRs

We love our community reviewing each other's work!

• Update metadata.yaml Clean ecology topics training section
  ecology
• Create tutorial.md yolo detection marine ecology
  template-and-tools
  ecology
• Add new tutorial for SAM3
  template-and-tools
  ecology
• Add Marie Jossé to Ecology Editorial board
  template-and-tools
  ecology
• Review community tuto

External Links

Favourite Topics

Favourite Formats