Bazante Sanders
Affiliations
Contributions
The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
Editorial Roles
This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.
Tutorials
- Assembly / Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data βοΈ π
- Assembly / Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data) βοΈ π
- Contributing to the Galaxy Training Material / Teaching Python π
- Foundations of Data Science / Advanced CLI in Galaxy βοΈ
- Foundations of Data Science / Python - Type annotations π
- Foundations of Data Science / Python - Lists & Strings & Dictionaries βοΈ π§
- Foundations of Data Science / Make & Snakemake βοΈ
- Foundations of Data Science / Python - Testing π
- Foundations of Data Science / Python - Multiprocessing π
- Foundations of Data Science / Python - Try & Except βοΈ π§
- Foundations of Data Science / Python - Argparse π π§
- Foundations of Data Science / Python - Functions βοΈ π§
- Foundations of Data Science / Python - Files & CSV βοΈ π§
- Foundations of Data Science / CLI basics βοΈ
- Foundations of Data Science / Python - Globbing βοΈ π§
- Foundations of Data Science / Python - Math βοΈ π§
- Foundations of Data Science / Introduction to SQL βοΈ
- Foundations of Data Science / Python - Loops βοΈ π§
- Foundations of Data Science / Python - Flow Control βοΈ π§
- Foundations of Data Science / Python - Basic Types & Type Conversion βοΈ π§
- Foundations of Data Science / Python - Subprocess βοΈ π§
- Foundations of Data Science / Python - Introductory Graduation βοΈ π§
- Genome Annotation / Identification of AMR genes in an assembled bacterial genome βοΈ π
GitHub Activity
github Issues Reported
Reviewed 1 PRs
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News
New Tutorials: Genome assembly of a MRSA genome
24 March 2021
Two new assembly tutorials have been added to the GTN! These tutorials walk you through the
process of assembling MRSA strains from real-world datasets. MRSA stands for βMethicillin-
resistant Staphylococcus aureus, it is resistance to several antibiotics and is a common
source of hospital-acquired infections and outbreaks. In this tutorial you will assess the
quality of your data, perform an assembly and assess its quality, analyze your data for the
presence of antimicrobial resistance (AMR) genes, and annotate the genome using Prokka and
JBrowse.