Mélanie Petera

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Topic: Metabolomics

Tutorials

• Proteomics / Label-free data analysis using MaxQuant 🧐
• Metabolomics / Mass spectrometry: LC-MS data processing ✍️
• Metabolomics / Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms) 🧐
• Metabolomics / Mass spectrometry: LC-MS preprocessing with XCMS ✍️ 🧐
• Metabolomics / Mass spectrometry: LC-MS analysis ✍️
• Metabolomics / Mass spectrometry : GC-MS analysis with metaMS package 🧐
• Introduction to Galaxy Analyses / Galaxy Basics for everyone 🧐
• Epigenetics / Infinium Human Methylation BeadChip 🧐
• Variant Analysis / From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis 🧐
• Variant Analysis / M. tuberculosis Variant Analysis 🧐
• Variant Analysis / Calling variants in non-diploid systems 🧐
• Galaxy Server administration / External Authentication 🧐
• Galaxy Server administration / Galaxy Installation with Ansible 🧐
• Transcriptomics / Reference-based RNAseq data analysis (long) 🧐
• Statistics and machine learning / Clustering in Machine Learning 🧐

Slides

• Metabolomics / Mass spectrometry: LC-MS preprocessing - advanced ✍️ 🧐

GitHub Activity

github Issues Reported

8 Merged Pull Requests

See all of the github Pull Requests and github Commits by Mélanie Petera.

• Metabolomics - Update of "LCMS preprocessing with XCMS"
  metabolomics
• [Metabo lcmsproc] Update of material and end of "In-dev" state
  improvement
  review-needed
• New tutotial: Metabolomics LC-MS data processing
  review-needed
• Metabolomics - LCMS preprocessing update
  review-needed
• Fix of some broken links

Reviewed 6 PRs

We love our community reviewing each other's work!

• Add tutorial: GC MS data processing [metabolomics]
  template-and-tools
  metabolomics
• github Auto Compress Images
• Metabolomics - Update of "LCMS preprocessing with XCMS"
  metabolomics
• GTN for GC-MS processing with metaMS on Galaxy
  metabolomics
• Metabolomics > LC-MS preprocessing : going from "Under dev" to "available"
  review-needed
  metabolomics

External Links

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