Galaxy Server administration — Community Home
This is a new, experimental "Community Home" for a given topic. It is intended to highlight community contributions over the years to a topic!2024 Year in Review
So many new additions to our community!
2
News
3
Events
4
Tutorials
1
Slides
3
Faqs
2
Contributors
News
- Galaxy Administrator Time Burden and Technology Usage
- 🪐📲 Hosting Galaxy at the Edge: Directly in Your Pocket!
Events
- Galaxy at SURF Research Cloud workshop
- 2023 Galaxy Admin Training (Ghent)
- Admin Training @ GCC 2022: Online Training Day
Tutorials
- Galaxy usage on SURF Research Cloud
- Pulsar usage on SURF Research Cloud
- Create a subdomain for your community on UseGalaxy.eu
- Alternative Celery Deployment for Galaxy
Slides
Faqs
- Why isn't my history updating?
- How can I get my container requiring jobs to run in a container?
- Using data source tools with Pulsar
Contributors
2023 Year in Review
So many new additions to our community!
1
Learning Pathways
7
Tutorials
15
Faqs
3
Grants
5
Contributors
Learning Pathways
Tutorials
- Monitoring Galaxy and Pulsar with Sentry
- Customizing the look of Galaxy (Manual)
- Deploying a Beacon v1 in Galaxy
- Customizing the look of Galaxy
- Setting up Celery Workers for Galaxy
- Server Maintenance: Cleanup, Backup, and Restoration
- Reference Data with Data Managers
Faqs
- Updating from 22.01 to 23.0 with Ansible
- Debugging Memory Leaks
- Galaxy UI is slow
- Tool missing from Galaxy
- Debugging tool memory errors
- Debugging tool errors
- Blank page or no CSS/JavaScript
- Database Issues
- Mapping Jobs to Specific Storage By User
- Failing all jobs from a specific user
- Library Permission Issues
- Time to git commit
- Using Git With Ansible Vaults
- Opening a split screen in byobu
- How do I see what variables are set for a host?
Grants
Contributors
2022 Year in Review
So many new additions to our community!
4
Tutorials
1
Slides
2
Recordings
11
Faqs
2
Contributors
Tutorials
- Deploying Tailscale/Headscale for private mesh networking
- Deploying Wireguard for private mesh networking
- How I learned to stop worrying and love the systemd
- Performant Uploads with TUS
Slides
Recordings
Faqs
- Galaxy Admin Training Path
- How many mules?
- Customising the welcome page
- Is YAML sensitive to True/true/False/false
- How do I know what I can do with a role? What variables are available?
- What is the difference between the roles with `role:` prefix and without?
- Error: "skipping: no hosts matched"
- What if you forget `--diff`?
- Define once, reference many times
- Variable connection
- How to read a Diff
Contributors
2021 Year in Review
So many new additions to our community!
1
News
5
Tutorials
1
Slides
26
Recordings
4
Faqs
3
Contributors
News
Tutorials
- Enable upload via FTP
- Upgrading Galaxy
- Mapping Jobs to Destinations using TPV
- Data Libraries
- Use Apptainer containers for running Galaxy jobs
Slides
Recordings
- Recording of Use Apptainer containers for running Galaxy jobs
- Recording of Galaxy Tool Management with Ephemeris
- Recording of Galaxy Tool Management with Ephemeris
- Recording of Running Jobs on Remote Resources with Pulsar
- Recording of Galaxy Installation with Ansible
- Recording of Upgrading Galaxy
- Recording of Training Infrastructure as a Service (TIaaS)
- Recording of Mapping Jobs to Destinations using TPV
- Recording of Use Apptainer containers for running Galaxy jobs
- Recording of Connecting Galaxy to a compute cluster
- Recording of Connecting Galaxy to a compute cluster
- Recording of Galaxy Tool Management with Ephemeris
- Recording of User, Role, Group, Quota, and Authentication managment
- Recording of Galaxy Monitoring with Telegraf and Grafana
- Recording of Galaxy Monitoring with Telegraf and Grafana
- Recording of Storage Management
- Recording of Galaxy Monitoring with gxadmin
- Recording of Ansible
- Recording of Ansible
- Recording of Running Jobs on Remote Resources with Pulsar
- Recording of Running Jobs on Remote Resources with Pulsar
- Recording of Data Libraries
- Recording of Reference Data with CVMFS
- Recording of Reference Data with CVMFS
- Recording of Galaxy Interactive Tools
- Recording of Galaxy Installation with Ansible
Faqs
- Got lost along the way?
- Install tools via the Admin UI
- Running Ansible on your remote machine
- Operating system compatibility
Contributors
2020 Year in Review
So many new additions to our community!
3
Tutorials
3
Slides
1
Grants
1
Contributors
2019 Year in Review
So many new additions to our community!
12
Tutorials
16
Slides
10
Contributors
Tutorials
- Automation with Jenkins
- Galaxy Installation on Kubernetes
- Managing Galaxy on Kubernetes
- Galaxy Monitoring with Reports
- Galaxy Monitoring with Telegraf and Grafana
- External Authentication
- Galaxy Installation with Ansible
- Galaxy Monitoring with gxadmin
- Distributed Object Storage
- Running Jobs on Remote Resources with Pulsar
- Galaxy Tool Management with Ephemeris
- Reference Data with CVMFS
Slides
- Galaxy Monitoring with gxadmin
- Reference Data with CVMFS
- Galaxy Monitoring
- Galaxy on the Cloud
- Empathy
- Galaxy Monitoring with Telegraf and Grafana
- Server Maintenance: Cleanup, Backup, and Restoration
- Storage Management
- Galaxy Troubleshooting
- Galactic Database
- External Authentication
- Reference Genomes in Galaxy
- Gearing towards production
- uWSGI
- Controlling Galaxy with systemd or Supervisor
- Galaxy Tool Management with Ephemeris
Contributors
2018 Year in Review
So many new additions to our community!
3
Tutorials
4
Slides
4
Contributors
2017 Year in Review
So many new additions to our community!
2
Slides
15
Contributors
2016 Year in Review
So many new additions to our community!
1
Tutorials
1
Slides
Cumulative Data as CSV
year,2015,2016,2017,2018,2019,2020,2021,2022,2023,2024 news,0,0,0,0,0,0,1,1,1,3 events,0,0,0,0,0,0,0,0,0,3 learning-pathways,0,0,0,0,0,0,0,0,1,1 tutorials,0,1,1,4,16,19,24,28,35,39 slides,0,1,3,7,23,26,27,28,28,29 recordings,0,0,0,0,0,0,26,28,28,28 faqs,0,0,0,0,0,0,4,15,30,33 workflows, grants,0,0,0,0,0,1,1,1,4,4 organisations, contributors,0,0,15,19,29,30,33,35,40,42