Introduction to Galaxy Analyses — Editorial Board Home
This is a new, experimental "Editorial Board Home" for a given topic. It is intended to provide a single place for maintainers and editorial board members to find out key information about their topic and identify action items.Editorial Board
Dave Clements Jennifer Hillman-JacksonAction Items
Item | Status | Why you should do this |
---|---|---|
Summary | Done ✅ | Provide a sufficiently detailed summary of the topic to let learners know what they're learning about in this topic. |
Sufficient Editorial Board Members | More required ❌ | Having multiple people sharing the burden of being responsible for a specific topic can reduce board member burn-out in the long term. |
Enable Subtopics | Done ✅ | Subtopics help organize the content and make it easier to navigate. |
Annotate Funders | Done ✅ (7 funders) | By annotating the funders of your topic's materials, you make it easier to write your grant reports later |
Learning Pathway CTA | Pending ❌ | By providing a Learning Pathway CTA, we can help guide learners to the best resources for learning about this topic. |
Topic Materials
Material | Contributions v2 help | Pre-requisites help | Follow up trainings | Data on Zenodo | Notebook | Server Compatibility |
---|---|---|---|---|---|---|
Introduction to Galaxy | ❌ | ❌ | ❌ | ✅ | ❌ | |
A short introduction to Galaxy | ✅ | ❌ | ❌ | ✅ | ❌ | |
Galaxy Basics for everyone | ✅ | ❌ | ❌ | ✅ | ❌ | |
Galaxy Basics for genomics | ✅ | ❌ | ❌ | ✅ | ❌ | |
Very Short Introductions: QC | ❌ | ❌ | ❌ | ✅ | ❌ | |
Data Manipulation Olympics | ✅ | ❌ | ❌ | ✅ | ❌ | |
From peaks to genes | ✅ | ❌ | ❌ | ✅ | ❌ | |
How to reproduce published Galaxy analyses | ✅ | ❌ | ❌ | ✅ | ❌ | |
IGV Introduction | ❌ | ❌ | ❌ | ❌ | ❌ | |
Introduction to Genomics and Galaxy | ✅ | ❌ | ❌ | ❌ | ❌ | |
NGS data logistics | ✅ | ❌ | ❌ | ❌ | ❌ | |
Options for using Galaxy | ❌ | ❌ | ❌ | ❌ | ❌ | |
Upload data to Galaxy | ❌ | ❌ | ❌ | ✅ | ❌ |
Topic Workflows
Material | Workflow | Updated | Version | Tests | Reports | Comments |
---|---|---|---|---|---|---|
A short introduction to Galaxy | Galaxy Intro Short | Dec 21, 2024 | 5 | ❌ | ❌ | ❌ |
Galaxy Basics for everyone | GTN Training: Galaxy 101 For Everyone | Dec 21, 2024 | 8 | ✅ | ❌ | ❌ |
Galaxy Basics for genomics | Find exons with the highest number of features | Dec 21, 2024 | 5 | ✅ | ❌ | ❌ |
Data Manipulation Olympics | GTN Tutorial: Data manipulation Olympics - all steps and exercises | Dec 21, 2024 | 1 | ❌ | ❌ | ❌ |
From peaks to genes | Galaxy Introduction Peaks2Genes - Part 1 | Dec 21, 2024 | 1 | ✅ | ❌ | ❌ |
How to reproduce published Galaxy analyses | GTN Training: Galaxy 101 For Everyone | Dec 21, 2024 | 1 | ❌ | ❌ | ❌ |
Introduction to Genomics and Galaxy | Galaxy Intro Strands 2 | Dec 21, 2024 | 4 | ❌ | ❌ | ❌ |
Introduction to Genomics and Galaxy | Galaxy Intro Strands | Dec 21, 2024 | 4 | ❌ | ❌ | ❌ |
NGS data logistics | NGS_tutorial | Dec 21, 2024 | 1 | ❌ | ❌ | ❌ |
Current Server Compatibility table for "Introduction to Galaxy"
Data as of 2024-12-21 00:11:32 +0000
Tool |
---|
Current Server Compatibility table for "A short introduction to Galaxy"
Data as of 2024-12-21 00:11:32 +0000
Tool | APOSTL | ARGs-OAP | CIRM-CFBP | ChemFlow | Coloc-stats | CorGAT | CoralSNP | CropGalaxy | Dintor | FreeBioinfo | GASLINI | Galaxy@AuBi | Galaxy@Pasteur | GalaxyTrakr | Genomic Hyperbrowser | GigaGalaxy | IPK Galaxy Blast Suite | ImmPort Galaxy | InteractoMIX | MISSISSIPPI | Mandoiu Lab | MiModD NacreousMap | Oqtans | Palfinder | PepSimili | PhagePromotor | UseGalaxy.be | UseGalaxy.cz | UseGalaxy.eu | UseGalaxy.fr | UseGalaxy.no | UseGalaxy.org (Main) | UseGalaxy.org.au | Viral Variant Visualizer (VVV) |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
toolshed.g2.bx.psu.edu/repos/devteam/fastq_quality_filter/cshl_fastq_quality_filter/1.0.1 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.0.2+galaxy2 | 1.0.2+galaxy0, 1.0.0 | Missing | Missing | Missing | Missing | Missing | 1.0.2+galaxy2 | Missing | Missing | Missing | Missing | Missing | Missing | 1.0.1 | 1.0.2+galaxy2, 1.0.2+galaxy0 | 1.0.1 | 1.0.2+galaxy2, 1.0.2+galaxy0, 1.0.2 | 1.0.2+galaxy0 | 1.0.1 | 1.0.2+galaxy2, 1.0.2+galaxy0, 1.0.0, 1.0.2 | Missing |
toolshed.g2.bx.psu.edu/repos/devteam/fastq_quality_filter/cshl_fastq_quality_filter/1.0.2+galaxy2 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.0.2+galaxy2 | 1.0.2+galaxy0, 1.0.0 | Missing | Missing | Missing | Missing | Missing | 1.0.2+galaxy2 | Missing | Missing | Missing | Missing | Missing | Missing | 1.0.2+galaxy0, 1.0.0, 1.0.1, 1.0.2 | 1.0.2+galaxy2 | 1.0.2+galaxy2 | 1.0.2+galaxy2 | 1.0.2+galaxy0 | 1.0.2+galaxy2 | 1.0.2+galaxy2 | Missing |
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 0.72 | 0.74+galaxy0 | 0.72+galaxy1, 0.73+galaxy0, 0.69 | Missing | Missing | Missing | Missing | Missing | 0.74+galaxy0 | Missing | Missing | Missing | 0.72 | 0.74+galaxy0 | 0.74+galaxy0 | 0.72 | 0.74+galaxy0, 0.69, 0.65, 0.68, 0.67, 0.52, 0.63, 0.62, 0.64 | 0.72 | 0.72 | 0.72+galaxy1, 0.73+galaxy0 | 0.72 | 0.72 | Missing |
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 0.72+galaxy1, 0.73+galaxy0, 0.72 | 0.74+galaxy0 | 0.72+galaxy1, 0.73+galaxy0, 0.69 | Missing | Missing | Missing | Missing | Missing | 0.74+galaxy0 | Missing | Missing | Missing | 0.72+galaxy1, 0.72, 0.71, 0.65 | 0.74+galaxy0 | 0.74+galaxy0 | 0.74+galaxy1 | 0.74+galaxy0, 0.69, 0.65, 0.68, 0.67, 0.52, 0.63, 0.62, 0.64 | 0.74+galaxy1 | 0.74+galaxy1 | 0.72+galaxy1, 0.73+galaxy0 | 0.74+galaxy1 | 0.74+galaxy1 | Missing |
Current Server Compatibility table for "Galaxy Basics for everyone"
Data as of 2024-12-21 00:11:32 +0000
Tool | APOSTL | ARGs-OAP | CIRM-CFBP | ChemFlow | Coloc-stats | CorGAT | CoralSNP | CropGalaxy | Dintor | FreeBioinfo | GASLINI | Galaxy@AuBi | Galaxy@Pasteur | GalaxyTrakr | Genomic Hyperbrowser | GigaGalaxy | IPK Galaxy Blast Suite | ImmPort Galaxy | InteractoMIX | MISSISSIPPI | Mandoiu Lab | MiModD NacreousMap | Oqtans | Palfinder | PepSimili | PhagePromotor | UseGalaxy.be | UseGalaxy.cz | UseGalaxy.eu | UseGalaxy.fr | UseGalaxy.no | UseGalaxy.org (Main) | UseGalaxy.org.au | Viral Variant Visualizer (VVV) |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cut1 | built-in | built-in | Missing | Missing | built-in | built-in | built-in | built-in | built-in | Missing | built-in | built-in | built-in | Missing | built-in | built-in | Missing | Missing | Missing | built-in | Missing | Missing | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in |
Grouping1 | built-in | built-in | Missing | Missing | built-in | built-in | built-in | built-in | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | Missing | Missing | Missing | built-in | Missing | Missing | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | Missing |
Remove beginning1 | built-in | built-in | Missing | Missing | built-in | built-in | built-in | built-in | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | Missing | Missing | Missing | built-in | Missing | Missing | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in |
csv_to_tabular | Missing | built-in | built-in | built-in | Missing | built-in | built-in | Missing | Missing | Missing | built-in | built-in | built-in | Missing | Missing | Missing | built-in | built-in | built-in | built-in | Missing | Missing | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in |
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sorted_uniq/1.1.0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0 | Missing | 1.1.0 | Missing | Missing | Missing | Missing | Missing | 9.3+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | Missing |
toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0 | 1.8+galaxy0 | 1.1.0 | Missing | Missing | Missing | Missing | Missing | 1.8+galaxy0 | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | Missing |
toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.3.5+galaxy0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 2.2.1+galaxy1 | Missing | 2.2.1+galaxy2 | Missing | Missing | Missing | Missing | Missing | 3.4.0+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | 2.2.1+galaxy1, 2.2.1+galaxy2, 2.2.1+galaxy0, 2.2.1 | 3.4.0+galaxy1 | 3.3.5+galaxy0 | 3.3.5+galaxy0 | 3.3.5+galaxy0 | 3.3.5+galaxy0 | 3.3.5+galaxy0 | Missing |
upload1 | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | Missing | built-in |
Current Server Compatibility table for "Galaxy Basics for genomics"
Data as of 2024-12-21 00:11:32 +0000
Tool | APOSTL | ARGs-OAP | CIRM-CFBP | ChemFlow | Coloc-stats | CorGAT | CoralSNP | CropGalaxy | Dintor | FreeBioinfo | GASLINI | Galaxy@AuBi | Galaxy@Pasteur | GalaxyTrakr | Genomic Hyperbrowser | GigaGalaxy | IPK Galaxy Blast Suite | ImmPort Galaxy | InteractoMIX | MISSISSIPPI | Mandoiu Lab | MiModD NacreousMap | Oqtans | Palfinder | PepSimili | PhagePromotor | UseGalaxy.be | UseGalaxy.cz | UseGalaxy.eu | UseGalaxy.fr | UseGalaxy.no | UseGalaxy.org (Main) | UseGalaxy.org.au | Viral Variant Visualizer (VVV) |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
comp1 | built-in | built-in | Missing | Missing | built-in | built-in | built-in | built-in | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | Missing | Missing | Missing | built-in | Missing | Missing | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | Missing |
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_head_tool/1.1.0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0 | Missing | 1.1.0 | Missing | Missing | Missing | Missing | Missing | 9.3+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | Missing |
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.1 | Missing | 1.1.1 | Missing | Missing | Missing | Missing | Missing | 9.3+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.1 | 1.1.1 | 1.1.1 | 1.1.1 | 1.1.1 | 1.1.1 | 1.1.1 | Missing |
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_intersectbed/2.30.0+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 2.27.1, 2.27.0.2 | Missing | 2.29.2, 2.30.0 | Missing | Missing | Missing | Missing | Missing | 2.30.0+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | 2.27.1, 2.27.0.2, 2.29.2, 2.30.0, 2.31.1+galaxy0, 2.27.1+galaxy1, 2.29.0, 2.24.0, 2.19.0 | 2.30.0+galaxy1 | 2.30.0+galaxy1 | 2.30.0+galaxy1 | 2.29.2, 2.30.0, 2.19.0 | 2.30.0+galaxy1 | 2.30.0+galaxy1 | Missing |
toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0 | 1.8+galaxy0 | 1.1.0 | Missing | Missing | Missing | Missing | Missing | 1.8+galaxy0 | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | Missing |
toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.8+galaxy0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0 | 1.8+galaxy0 | 1.1.0, 1.1.0+galaxy2 | Missing | Missing | Missing | Missing | Missing | 1.8+galaxy0 | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0, 1.0.6 | 1.8+galaxy0 | 1.8+galaxy0 | 1.8+galaxy0 | 1.1.0, 1.1.0+galaxy2, 1.0.6, 1.1.0+galaxy1 | 1.8+galaxy0 | 1.8+galaxy0 | Missing |
upload1 | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | Missing | built-in |
Current Server Compatibility table for "Very Short Introductions: QC"
Data as of 2024-12-21 00:11:32 +0000
Tool | APOSTL | ARGs-OAP | CIRM-CFBP | ChemFlow | Coloc-stats | CorGAT | CoralSNP | CropGalaxy | Dintor | FreeBioinfo | GASLINI | Galaxy@AuBi | Galaxy@Pasteur | GalaxyTrakr | Genomic Hyperbrowser | GigaGalaxy | IPK Galaxy Blast Suite | ImmPort Galaxy | InteractoMIX | MISSISSIPPI | Mandoiu Lab | MiModD NacreousMap | Oqtans | Palfinder | PepSimili | PhagePromotor | UseGalaxy.be | UseGalaxy.cz | UseGalaxy.eu | UseGalaxy.fr | UseGalaxy.no | UseGalaxy.org (Main) | UseGalaxy.org.au | Viral Variant Visualizer (VVV) |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.2+galaxy0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 0.23.2+galaxy0 | 0.23.2+galaxy0 | 0.23.2+galaxy0 | Missing | Missing | Missing | Missing | Missing | 0.23.4+galaxy0 | Missing | Missing | Missing | Missing | Missing | Missing | 0.20.1+galaxy0, 0.19.5+galaxy1, 0.19.5, 0.18.0.0, 0.12.4.0, 0.19.3.3, 0.19.3.2 | 0.23.2+galaxy0 | 0.23.2+galaxy0 | 0.23.2+galaxy0 | 0.23.2+galaxy0 | 0.23.2+galaxy0 | 0.23.2+galaxy0 | 0.23.2+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.11+galaxy1 | Missing | 1.11+galaxy1 | Missing | Missing | Missing | Missing | Missing | 1.11+galaxy1 | Missing | Missing | Missing | Missing | Missing | 1.11+galaxy1 | 1.8+galaxy0, 1.9 | 1.11+galaxy1 | 1.11+galaxy1 | 1.11+galaxy1 | 1.7, 1.11+galaxy0, 1.9+galaxy1, 1.8+galaxy0, 1.9, 1.7.1, 1.8+galaxy1, 1.8+galaxy2 | 1.11+galaxy1 | 1.11+galaxy1 | Missing |
Current Server Compatibility table for "Data Manipulation Olympics"
Data as of 2024-12-21 00:11:32 +0000
Tool | APOSTL | ARGs-OAP | CIRM-CFBP | ChemFlow | Coloc-stats | CorGAT | CoralSNP | CropGalaxy | Dintor | FreeBioinfo | GASLINI | Galaxy@AuBi | Galaxy@Pasteur | GalaxyTrakr | Genomic Hyperbrowser | GigaGalaxy | IPK Galaxy Blast Suite | ImmPort Galaxy | InteractoMIX | MISSISSIPPI | Mandoiu Lab | MiModD NacreousMap | Oqtans | Palfinder | PepSimili | PhagePromotor | UseGalaxy.be | UseGalaxy.cz | UseGalaxy.eu | UseGalaxy.fr | UseGalaxy.no | UseGalaxy.org (Main) | UseGalaxy.org.au | Viral Variant Visualizer (VVV) |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Count1 | built-in | built-in | Missing | Missing | Missing | built-in | built-in | built-in | Missing | Missing | built-in | built-in | built-in | Missing | built-in | Missing | Missing | Missing | Missing | built-in | Missing | Missing | Missing | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | Missing |
Cut1 | built-in | built-in | Missing | Missing | built-in | built-in | built-in | built-in | built-in | Missing | built-in | built-in | built-in | Missing | built-in | built-in | Missing | Missing | Missing | built-in | Missing | Missing | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in |
Filter1 | built-in | built-in | Missing | Missing | built-in | built-in | built-in | built-in | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | Missing | Missing | Missing | built-in | Missing | Missing | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in |
Grouping1 | built-in | built-in | Missing | Missing | built-in | built-in | built-in | built-in | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | Missing | Missing | Missing | built-in | Missing | Missing | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | Missing |
Remove beginning1 | built-in | built-in | Missing | Missing | built-in | built-in | built-in | built-in | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | Missing | Missing | Missing | built-in | Missing | Missing | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in |
Show beginning1 | built-in | built-in | Missing | Missing | built-in | built-in | built-in | built-in | built-in | Missing | built-in | built-in | built-in | Missing | built-in | built-in | Missing | Missing | Missing | built-in | Missing | Missing | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in |
cat1 | built-in | built-in | Missing | Missing | built-in | built-in | built-in | built-in | built-in | Missing | built-in | built-in | built-in | Missing | built-in | built-in | Missing | Missing | Missing | built-in | Missing | Missing | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in |
join1 | built-in | built-in | Missing | Missing | built-in | built-in | built-in | built-in | Missing | Missing | built-in | built-in | built-in | built-in | built-in | built-in | Missing | Missing | Missing | built-in | Missing | Missing | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | Missing |
tabular_to_csv | Missing | built-in | built-in | built-in | Missing | built-in | built-in | Missing | Missing | Missing | built-in | built-in | built-in | Missing | Missing | Missing | built-in | built-in | built-in | built-in | Missing | Missing | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in |
toolshed.g2.bx.psu.edu/repos/bgruening/split_file_on_column/tp_split_on_column/0.4 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 0.6 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 0.4 | 0.4 | 0.4 | 0.4 | 0.4 | 0.6 | Missing |
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.1 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 0.1.1 | Missing | 0.1.1 | Missing | Missing | Missing | Missing | Missing | 9.3+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | 0.1.0 | 0.1.1 | 0.1.1 | 0.1.1 | 0.1.1 | 0.1.1 | 0.1.1 | Missing |
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.1 | Missing | 1.1.1 | Missing | Missing | Missing | Missing | Missing | 9.3+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.1 | 1.1.1 | 1.1.1 | 1.1.1 | 1.1.1 | 1.1.1 | 1.1.1 | Missing |
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sorted_uniq/1.1.0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0 | Missing | 1.1.0 | Missing | Missing | Missing | Missing | Missing | 9.3+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | Missing |
toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.6 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.6 | Missing | 1.6 | 1.1.0 | Missing | Missing | Missing | Missing | 2.0 | Missing | Missing | Missing | Missing | Missing | Missing | 1.2.0, 1.5, 1.3.0, 1.1.0 | 2.0, 1.4, 1.1.0 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | Missing |
toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.1 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.0.3 | 1.0.1 | Missing | Missing | Missing | Missing | Missing | 1.0.3 | Missing | Missing | Missing | Missing | Missing | Missing | 1.0.1 | 1.0.3 | 1.0.1 | 1.0.1 | 1.0.3 | 1.0.1 | 1.0.1 | Missing |
toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0 | 1.8+galaxy0 | 1.1.0 | Missing | Missing | Missing | Missing | Missing | 1.8+galaxy0 | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | Missing |
toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0+galaxy2 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0 | 1.8+galaxy0 | 1.1.0+galaxy2 | Missing | Missing | Missing | Missing | Missing | 1.8+galaxy0 | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0, 1.0.6 | 1.1.0, 1.8+galaxy0, 1.0.6, 1.1.0+galaxy1 | 1.1.0+galaxy2 | 1.1.0+galaxy2 | 1.1.0+galaxy2 | 1.1.0+galaxy2 | 1.1.0+galaxy2 | Missing |
upload1 | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | Missing | built-in |
wc_gnu | built-in | built-in | Missing | Missing | built-in | built-in | built-in | built-in | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | Missing | Missing | Missing | built-in | Missing | Missing | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in |
{{version_cat}} | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing |
{{version_compute}} | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing |
{{version_count}} | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing |
{{version_cut_advanced}} | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing |
{{version_cut_columns}} | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing |
{{version_datamash}} | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing |
{{version_filter}} | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing |
{{version_join}} | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing |
{{version_paste}} | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing |
{{version_remove_beginning}} | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing |
{{version_remove_columns_by_header}} | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing |
{{version_replace_text_column}} | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing |
{{version_replace_text_line}} | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing |
{{version_select_first}} | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing |
{{version_sort}} | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing |
{{version_split}} | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing |
{{version_unique}} | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing |
{{version_wc}} | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing |
Current Server Compatibility table for "From peaks to genes"
Data as of 2024-12-21 00:11:32 +0000
Tool | APOSTL | ARGs-OAP | CIRM-CFBP | ChemFlow | Coloc-stats | CorGAT | CoralSNP | CropGalaxy | Dintor | FreeBioinfo | GASLINI | Galaxy@AuBi | Galaxy@Pasteur | GalaxyTrakr | Genomic Hyperbrowser | GigaGalaxy | IPK Galaxy Blast Suite | ImmPort Galaxy | InteractoMIX | MISSISSIPPI | Mandoiu Lab | MiModD NacreousMap | Oqtans | Palfinder | PepSimili | PhagePromotor | UseGalaxy.be | UseGalaxy.cz | UseGalaxy.eu | UseGalaxy.fr | UseGalaxy.no | UseGalaxy.org (Main) | UseGalaxy.org.au | Viral Variant Visualizer (VVV) |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CONVERTER_interval_to_bed_0 | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in |
Cut1 | built-in | built-in | Missing | Missing | built-in | built-in | built-in | built-in | built-in | Missing | built-in | built-in | built-in | Missing | built-in | built-in | Missing | Missing | Missing | built-in | Missing | Missing | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in |
Grouping1 | built-in | built-in | Missing | Missing | built-in | built-in | built-in | built-in | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | Missing | Missing | Missing | built-in | Missing | Missing | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | Missing |
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.3 | Missing | 1.1.3 | Missing | Missing | Missing | Missing | Missing | 9.3+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.3 | 1.1.3 | 1.1.3 | 1.1.3 | 1.1.3 | 1.1.3 | 1.1.3 | Missing |
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.1 | Missing | 1.1.1 | Missing | Missing | Missing | Missing | Missing | 9.3+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.1 | 1.1.1 | 1.1.1 | 1.1.1 | 1.1.1 | 1.1.1 | 1.1.1 | Missing |
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0 | Missing | 1.1.0 | Missing | Missing | Missing | Missing | Missing | 9.3+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | Missing |
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/9.3+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0 | Missing | 1.1.0 | Missing | Missing | Missing | Missing | Missing | 9.3+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0, 1.0.0 | 1.1.0 | 9.3+galaxy1 | 9.3+galaxy1 | 1.1.0 | 9.3+galaxy1 | 9.3+galaxy1 | Missing |
toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 2.0 | Missing | 1.6, 1.2.0 | 1.1.0 | Missing | Missing | Missing | Missing | 2.0 | Missing | Missing | Missing | Missing | Missing | Missing | 1.2.0, 1.5, 1.3.0, 1.1.0 | 2.0 | 2.0 | 2.0 | 2.0 | 2.0 | 2.0 | Missing |
toolshed.g2.bx.psu.edu/repos/devteam/get_flanks/get_flanks1/1.0.0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.0.0 | 1.0.0 | 1.0.0 | 1.0.0 | 1.0.0 | 1.0.0 | 1.0.0 | Missing |
toolshed.g2.bx.psu.edu/repos/devteam/intersect/gops_intersect_1/1.0.0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.0.0 | Missing | Missing | Missing | Missing | Missing | Missing | 1.0.0 | 1.0.0 | 1.0.0 | 1.0.0 | 1.0.0 | 1.0.0 | 1.0.0 | Missing |
upload1 | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | Missing | built-in |
Current Server Compatibility table for "How to reproduce published Galaxy analyses"
Data as of 2024-12-21 00:11:32 +0000
Tool | APOSTL | ARGs-OAP | CIRM-CFBP | ChemFlow | Coloc-stats | CorGAT | CoralSNP | CropGalaxy | Dintor | FreeBioinfo | GASLINI | Galaxy@AuBi | Galaxy@Pasteur | GalaxyTrakr | Genomic Hyperbrowser | GigaGalaxy | IPK Galaxy Blast Suite | ImmPort Galaxy | InteractoMIX | MISSISSIPPI | Mandoiu Lab | MiModD NacreousMap | Oqtans | Palfinder | PepSimili | PhagePromotor | UseGalaxy.be | UseGalaxy.cz | UseGalaxy.eu | UseGalaxy.fr | UseGalaxy.no | UseGalaxy.org (Main) | UseGalaxy.org.au | Viral Variant Visualizer (VVV) |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cut1 | built-in | built-in | Missing | Missing | built-in | built-in | built-in | built-in | built-in | Missing | built-in | built-in | built-in | Missing | built-in | built-in | Missing | Missing | Missing | built-in | Missing | Missing | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in |
Grouping1 | built-in | built-in | Missing | Missing | built-in | built-in | built-in | built-in | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | Missing | Missing | Missing | built-in | Missing | Missing | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | Missing |
Remove beginning1 | built-in | built-in | Missing | Missing | built-in | built-in | built-in | built-in | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | Missing | Missing | Missing | built-in | Missing | Missing | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in |
csv_to_tabular | Missing | built-in | built-in | built-in | Missing | built-in | built-in | Missing | Missing | Missing | built-in | built-in | built-in | Missing | Missing | Missing | built-in | built-in | built-in | built-in | Missing | Missing | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in |
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sorted_uniq/1.1.0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0 | Missing | 1.1.0 | Missing | Missing | Missing | Missing | Missing | 9.3+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | Missing |
toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0 | 1.8+galaxy0 | 1.1.0 | Missing | Missing | Missing | Missing | Missing | 1.8+galaxy0 | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | Missing |
toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/2.2.1+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 2.2.1+galaxy1 | Missing | 2.2.1+galaxy2 | Missing | Missing | Missing | Missing | Missing | 3.4.0+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | 2.2.1+galaxy1 | 3.4.0+galaxy1 | 2.2.1+galaxy1 | 2.2.1+galaxy2, 3.4.0+galaxy1, 3.4.0+galaxy0, 3.3.5+galaxy1, 3.3.5+galaxy0, 3.3.5+galaxy2 | 2.2.1+galaxy2, 3.3.5+galaxy0 | 2.2.1+galaxy1 | 2.2.1+galaxy2, 3.4.0+galaxy1, 3.4.0+galaxy0, 3.3.5+galaxy1, 3.3.5+galaxy0, 3.3.5+galaxy2 | Missing |
upload1 | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | Missing | built-in |
Current Server Compatibility table for "IGV Introduction"
Data as of 2024-12-21 00:11:32 +0000
Tool |
---|
Current Server Compatibility table for "Introduction to Genomics and Galaxy"
Data as of 2024-12-21 00:11:32 +0000
Tool | APOSTL | ARGs-OAP | CIRM-CFBP | ChemFlow | Coloc-stats | CorGAT | CoralSNP | CropGalaxy | Dintor | FreeBioinfo | GASLINI | Galaxy@AuBi | Galaxy@Pasteur | GalaxyTrakr | Genomic Hyperbrowser | GigaGalaxy | IPK Galaxy Blast Suite | ImmPort Galaxy | InteractoMIX | MISSISSIPPI | Mandoiu Lab | MiModD NacreousMap | Oqtans | Palfinder | PepSimili | PhagePromotor | UseGalaxy.be | UseGalaxy.cz | UseGalaxy.eu | UseGalaxy.fr | UseGalaxy.no | UseGalaxy.org (Main) | UseGalaxy.org.au | Viral Variant Visualizer (VVV) |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Filter1 | built-in | built-in | Missing | Missing | built-in | built-in | built-in | built-in | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | Missing | Missing | Missing | built-in | Missing | Missing | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in |
cat1 | built-in | built-in | Missing | Missing | built-in | built-in | built-in | built-in | built-in | Missing | built-in | built-in | built-in | Missing | built-in | built-in | Missing | Missing | Missing | built-in | Missing | Missing | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in |
gene2exon1 | Missing | built-in | Missing | Missing | Missing | built-in | built-in | Missing | Missing | Missing | built-in | built-in | built-in | Missing | built-in | Missing | Missing | Missing | Missing | built-in | Missing | Missing | Missing | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | Missing |
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 0.1.0 | Missing | 0.1.0 | Missing | Missing | Missing | Missing | Missing | 9.3+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | 0.1.0 | 0.1.0 | 0.1.0 | 0.1.0 | 0.1.0 | 0.1.0 | 0.1.0 | Missing |
toolshed.g2.bx.psu.edu/repos/devteam/intersect/gops_intersect_1/1.0.0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.0.0 | Missing | Missing | Missing | Missing | Missing | Missing | 1.0.0 | 1.0.0 | 1.0.0 | 1.0.0 | 1.0.0 | 1.0.0 | 1.0.0 | Missing |
Current Server Compatibility table for "NGS data logistics"
Data as of 2024-12-21 00:11:32 +0000
Tool | APOSTL | ARGs-OAP | CIRM-CFBP | ChemFlow | Coloc-stats | CorGAT | CoralSNP | CropGalaxy | Dintor | FreeBioinfo | GASLINI | Galaxy@AuBi | Galaxy@Pasteur | GalaxyTrakr | Genomic Hyperbrowser | GigaGalaxy | IPK Galaxy Blast Suite | ImmPort Galaxy | InteractoMIX | MISSISSIPPI | Mandoiu Lab | MiModD NacreousMap | Oqtans | Palfinder | PepSimili | PhagePromotor | UseGalaxy.be | UseGalaxy.cz | UseGalaxy.eu | UseGalaxy.fr | UseGalaxy.no | UseGalaxy.org (Main) | UseGalaxy.org.au | Viral Variant Visualizer (VVV) |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Grep1 | built-in | built-in | Missing | Missing | built-in | built-in | built-in | built-in | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | Missing | Missing | Missing | built-in | Missing | Missing | built-in | Missing | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in | built-in |
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/1.1.0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0 | Missing | 1.1.0 | Missing | Missing | Missing | Missing | Missing | 9.3+galaxy2, 9.3+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 | Missing |
toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.1 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 0.7.17.1 | 0.7.18 | 0.7.17.1 | Missing | Missing | Missing | Missing | Missing | 0.7.18, 0.7.17.2 | Missing | Missing | Missing | Missing | Missing | Missing | 0.7.17.1 | 0.7.17.1 | 0.7.17.1 | 0.7.17.1 | 0.7.17.1 | 0.7.17.1 | 0.7.17.1 | 0.7.17.2 |
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.2 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 2.18.2.1, 3.1.1.0 | Missing | 2.18.2.2 | Missing | Missing | Missing | Missing | Missing | 3.1.1.0 | Missing | Missing | Missing | Missing | Missing | Missing | 2.18.2.2 | 2.18.2.3, 2.18.2.4 | 2.18.2.2 | 2.18.2.2 | 2.18.2.2 | 2.18.2.2 | 2.18.2.2 | Missing |
toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.2+galaxy2 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 2.0.2+galaxy2 | 2.0.4 | 2.0.4, 2.0 | Missing | Missing | Missing | Missing | Missing | 2.0.5 | Missing | Missing | Missing | Missing | Missing | Missing | 2.0.2+galaxy2 | 2.0.4 | 2.0.2+galaxy2 | 2.0.2+galaxy2 | 2.0.2+galaxy2 | 2.0.2+galaxy2 | 2.0.2+galaxy2 | Missing |
toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.20.1+galaxy0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 0.20.1+galaxy0 | 0.23.2+galaxy0 | 0.20.1+galaxy0 | Missing | Missing | Missing | Missing | Missing | 0.23.4+galaxy0 | Missing | Missing | Missing | Missing | Missing | Missing | 0.20.1+galaxy0 | 0.23.2+galaxy0 | 0.20.1+galaxy0 | 0.20.1+galaxy0 | 0.20.1+galaxy0 | 0.20.1+galaxy0 | 0.20.1+galaxy0 | 0.23.2+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.5+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 2.1.5+galaxy1 | Missing | Missing | Missing | Missing | Missing | 2.1.5+galaxy2 | Missing | Missing | Missing | Missing | Missing | Missing | 2.1.3.1+galaxy0, 2.1.3.1+galaxy2, 2.1.3.1+galaxy1, 2.1.5+galaxy0 | 2.1.5+galaxy2 | 2.1.5+galaxy1 | 2.1.5+galaxy1 | 2.1.5+galaxy1 | 2.1.5+galaxy1 | 2.1.5+galaxy1 | Missing |
toolshed.g2.bx.psu.edu/repos/iuc/lofreq_indelqual/lofreq_indelqual/2.1.5+galaxy0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 2.1.5+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | 2.1.5+galaxy0 | 2.1.5+galaxy1 | 2.1.5+galaxy0 | 2.1.5+galaxy0 | 2.1.5+galaxy0 | 2.1.5+galaxy0 | 2.1.5+galaxy0 | Missing |
toolshed.g2.bx.psu.edu/repos/iuc/lofreq_viterbi/lofreq_viterbi/2.1.5+galaxy0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 2.1.5+galaxy0 | Missing | Missing | Missing | Missing | Missing | Missing | 2.1.5+galaxy0 | 2.1.5+galaxy0 | 2.1.5+galaxy0 | 2.1.5+galaxy0 | 2.1.5+galaxy0 | 2.1.5+galaxy0 | 2.1.5+galaxy0 | Missing |
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.8+galaxy1 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.11+galaxy1, 1.7, 1.11+galaxy0, 1.6 | Missing | 1.11+galaxy1, 1.7, 1.11+galaxy0, 1.9+galaxy1 | Missing | Missing | Missing | Missing | Missing | 1.11+galaxy1 | Missing | Missing | Missing | Missing | Missing | 1.11+galaxy1 | 1.8+galaxy0, 1.9 | 1.8+galaxy1 | 1.8+galaxy1 | 1.8+galaxy1 | 1.8+galaxy1 | 1.8+galaxy1 | 1.8+galaxy1 | Missing |
toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.9+galaxy2 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 1.9, 1.15.1+galaxy2 | Missing | 1.9+galaxy3 | Missing | Missing | Missing | Missing | Missing | 1.15.1+galaxy2 | Missing | Missing | Missing | Missing | Missing | Missing | 1.9, 1.9+galaxy1 | 1.15.1+galaxy0 | 1.9+galaxy2 | 1.9+galaxy2 | 1.9+galaxy2 | 1.9+galaxy2 | 1.9+galaxy2 | Missing |
toolshed.g2.bx.psu.edu/repos/iuc/snpeff_sars_cov_2/snpeff_sars_cov_2/4.5covid19 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 4.5covid19 | Missing | Missing | Missing | Missing | Missing | 4.5covid19 | Missing | Missing | Missing | Missing | Missing | Missing | 4.5covid19 | 4.5covid19 | 4.5covid19 | 4.5covid19 | 4.5covid19 | 4.5covid19 | 4.5covid19 | Missing |
toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_extractFields/4.3+t.galaxy0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 4.3+t.galaxy0 | Missing | Missing | Missing | Missing | Missing | 4.3+t.galaxy0 | Missing | Missing | Missing | Missing | Missing | 4.3+t.galaxy0 | Missing | Missing | Missing | Missing | Missing | Missing | 4.3+t.galaxy0 | 4.3+t.galaxy0 | 4.3+t.galaxy0 | 4.3+t.galaxy0 | 4.3+t.galaxy0 | 4.3+t.galaxy0 | 4.3+t.galaxy0 | Missing |
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/2.10.8+galaxy0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 2.10.9+galaxy0 | Missing | Missing | Missing | Missing | Missing | 3.1.1+galaxy0 | Missing | Missing | Missing | Missing | Missing | Missing | 2.10.4+galaxy1, 2.10.7+galaxy1, 2.11.0+galaxy0, 2.10.4 | 2.10.8+galaxy0 | 2.10.8+galaxy0 | 2.10.8+galaxy0 | 2.11.0+galaxy1 | 2.10.8+galaxy0 | 2.10.8+galaxy0 | Missing |
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/2.10.9+galaxy0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 2.10.9+galaxy0 | Missing | Missing | Missing | Missing | Missing | 3.1.1+galaxy0 | Missing | Missing | Missing | Missing | Missing | Missing | 2.10.4+galaxy1, 2.10.7+galaxy1, 2.11.0+galaxy0, 2.10.4 | 2.10.9+galaxy0 | 2.10.9+galaxy0 | 3.1.1+galaxy0, 2.11.0+galaxy0, 2.10.4, 2.10.8+galaxy0, 2.10.7+galaxy2, 3.0.5+galaxy3, 3.0.3+galaxy0, 3.0.5+galaxy0, 3.1.1+galaxy1, 2.11.0+galaxy1, 3.0.8+galaxy1, 3.1.0+galaxy1, 3.0.8+galaxy0, 3.1.0+galaxy0, 3.0.10+galaxy0, 3.0.0+galaxy0 | 2.11.0+galaxy1 | 2.10.9+galaxy0 | 2.10.9+galaxy0 | Missing |
toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.0 | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | Missing | 5.1.0, 4.1, 4.2 | Missing | 5.1.0 | Missing | Missing | Missing | Missing | Missing | 5.1.0 | Missing | Missing | Missing | Missing | Missing | Missing | 4.0 | 5.1.0, 1.0 | 4.0 | 5.1.0, 4.1 | 5.1.0, 4.1, 4.2 | 4.0 | 4.0 | Missing |
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Current Server Compatibility table for "Upload data to Galaxy"
Data as of 2024-12-21 00:11:32 +0000
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