Beatriz Serrano-Solano

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Image analysis using Deep Learning

Tutorials

• Microbiome / 16S Microbial analysis with Nanopore data 🧐
• Using Galaxy and Managing your Data / Submitting sequence data to ENA 🧐
• Using Galaxy and Managing your Data / Using dataset collections 🧐
• Single Cell / Analysis of plant scRNA-Seq Data with Scanpy ✍️ 🧐
• Single Cell / Generating a single cell matrix using Alevin 🧐
• Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Galaxy Climate JupyterLab 🧐
• Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) 🧐
• Imaging / Object tracking using CellProfiler ✍️ 🧐
• Imaging / Nucleoli segmentation and feature extraction using CellProfiler ✍️ 🧐
• Foundations of Data Science / Python - Lists & Strings & Dictionaries 🧐
• Foundations of Data Science / Python - Try & Except 🧐
• Foundations of Data Science / Python - Argparse 🧐
• Foundations of Data Science / Python - Functions 🧐
• Foundations of Data Science / Python - Files & CSV 🧐
• Foundations of Data Science / Python - Globbing 🧐
• Foundations of Data Science / Python - Math 🧐
• Foundations of Data Science / Python - Loops 🧐
• Foundations of Data Science / Python - Flow Control 🧐
• Foundations of Data Science / Python - Basic Types & Type Conversion 🧐
• Foundations of Data Science / Python - Subprocess 🧐
• Foundations of Data Science / Python - Introductory Graduation 🧐
• Transcriptomics / Whole transcriptome analysis of Arabidopsis thaliana ✍️ 🧐
• Variant Analysis / Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data 🧐
• Development in Galaxy / Generic plugins 🧐
• Introduction to Galaxy Analyses / A short introduction to Galaxy 🧐
• Single Cell / Filtrado, representación y exploración de secuenciación de ARN de células únicas ✍️
• Single Cell / Generación de una matriz de datos de secuenciación de ARN de células únicas utilizando Alevin 🧐
• Introduction to Galaxy Analyses / Breve introducción a Galaxy - en español 🧐

Slides

• Using Galaxy and Managing your Data / Submitting SARS-CoV-2 sequences to ENA 🧐
• Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) 🧐
• Imaging / Nucleoli Segmentation
  &
  Feature Extraction
  using CellProfiler ✍️ 🧐
• Transcriptomics / Whole transcriptome analysis of Arabidopsis thaliana 🧐
• Introduction to Galaxy Analyses / A Short Introduction to Galaxy 🧐
• Introduction to Galaxy Analyses / Una Breve Introducción a Galaxy 🧐

Video Recordings

• Galaxy Server administration / Connecting Galaxy to a compute cluster 💬
• Visualisation / Visualisation with Circos 💬

GitHub Activity

github Issues Reported

18 Merged Pull Requests

See all of the github Pull Requests and github Commits by Beatriz Serrano-Solano.

• Add AI4Life to the list of funders
  template-and-tools
• Update my details
• Fix typo in FAQ
• Fix typo in FAQ area
• Rename datasets_purgin_datasets.md to datasets_purging_datasets.md

Reviewed 84 PRs

We love our community reviewing each other's work!

• Add AI4Life to the list of funders
  template-and-tools
• Add sentence to first slide to tip users on how to move between them
  template-and-tools
• [Dev] Generic Viz Plugins: remove broken links
• Fixing Area in FAQs
• Fixes #3411

News

External Links

Favourite Topics

Favourite Formats