Hans-Rudolf Hotz

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Tutorials

• Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition 📝
• Galaxy Server administration / Galaxy Database schema ✍️
• Single Cell / Clustering 3K PBMCs with Scanpy ✍️ 🧐
• Single Cell / Pre-processing of 10X Single-Cell RNA Datasets ✍️ 🧐
• Epigenetics / ATAC-Seq data analysis 🧐
• Transcriptomics / Reference-based RNA-Seq data analysis 🧐
• Introduction to Galaxy Analyses / From peaks to genes 🧐

Slides

• Galaxy Server administration / Galaxy Administrator Time Burden and Technology Usage 🖥

FAQs

• Automatically trim adapters (without providing custom sequences)
• In bowtie 2 parameters, in place of 1000 for other experiments, should we mention the median fragment length observed in our library?
• Changing the heatmap colours
• UCSC import: what should my file look like?

Video Recordings

• Single Cell / Clustering 3K PBMCs with Scanpy 💬
• Epigenetics / ATAC-Seq data analysis 💬

GitHub Activity

github Issues Reported

31 Merged Pull Requests

See all of the github Pull Requests and github Commits by Hans-Rudolf Hotz.

• Update Reference-based RNA-Seq data analysis
  transcriptomics
• small fixes to Reference-based RNA-Seq data analysis tutorial
  transcriptomics
• add another Mastodon account (CONTRIBUTORS.yaml)
  template-and-tools
• update CONTRIBUTORS.yaml
  template-and-tools
• fixing typos in pathogen detection
  metagenomics

Reviewed 13 PRs

We love our community reviewing each other's work!

• Spoc writeathon 2
  template-and-tools
• Fix CYOA of collection split in Ref-based
  transcriptomics
• Add a third way to run DESeq2 in Ref-based tuto
  transcriptomics
• Update ref based rna-seq
• WIP ATAC-seq update

News

External Links

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