Deepti Varshney
Affiliations
UFR
ELIXIR EuropeContributions
The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
Editorial Roles
This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.
Tutorials
- Assembly / Large genome assembly and polishing 🧐
- Assembly / Chloroplast genome assembly 🧐
- Assembly / Decontamination of a genome assembly 🧐
- Assembly / Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data 🧐
- Assembly / ERGA post-assembly QC 🧐
- Microbiome / Binning of metagenomic sequencing data 🧐
- Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition 🧐
- Microbiome / 16S Microbial analysis with Nanopore data 🧐
- Microbiome / Building an amplicon sequence variant (ASV) table from 16S data using DADA2 🧐
- Microbiome / Calculating α and β diversity from microbiome taxonomic data 🧐
- Using Galaxy and Managing your Data / Understanding Galaxy history system 🧐
- Sequence analysis / NCBI BLAST+ against the MAdLand ✍️ 🧐
- Genome Annotation / Identification of AMR genes in an assembled bacterial genome 🧐
- Genome Annotation / Long non-coding RNAs (lncRNAs) annotation with FEELnc 🧐
- Genome Annotation / From small to large-scale genome comparison 🧐
