Plants
Set of tutorials from various topics that use plant datasets for analysis
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Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Chloroplast genome assembly | |||||
| ERGA post-assembly QC | |||||
| Large genome assembly and polishing |
FAIR Data, Workflows, and Research
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| DataPLANT ARCs |
Genome Annotation
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| From small to large-scale genome comparison |
Microbiome
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| 16S Microbial analysis with Nanopore data |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants | |||||
| NCBI BLAST+ against the MAdLand |
Single Cell
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Analysis of plant scRNA-Seq Data with Scanpy |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Whole transcriptome analysis of Arabidopsis thaliana |
Editorial Board
This material is reviewed by our Editorial Board:
Deepti Varshney
Saskia Hiltemann
Contributors
This material was contributed to by:
Wendi Bacon
Fabian Recktenwald
Cristina Martins Rodrigues
Kevin Frey
Beatriz Serrano-Solano
Saskia Hiltemann
Tom Brown
Deepti Varshney
Stella Eggels
Esteban Perez-Wohlfeil
Anna Syme
Helena Rasche
Martin Kuhl
Sabrina Zander
Delphine Lariviere
Dominik Brilhaus
Cristóbal Gallardo
Pavankumar Videm
Björn Grüning
Mehmet Tekman
Funding
These individuals or organisations provided funding support for the development of this resource
