Plants

Set of tutorials from various topics that use plant datasets for analysis

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Chloroplast genome assembly
plants nanopore jbrowse1
ERGA post-assembly QC
plants animals genome assembly QC
Large genome assembly and polishing
assembly polishing nanopore plants

FAIR Data, Workflows, and Research

Lesson Slides Hands-on Recordings Input dataset Workflows
DataPLANT ARCs
plants fair data stewardship

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
From small to large-scale genome comparison
plants prokaryote

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
16S Microbial analysis with Nanopore data
metabarcoding 16S nanopore microgalaxy plants

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
NCBI BLAST+ against the MAdLand
plants

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Analysis of plant scRNA-Seq Data with Scanpy
plants paper-replication

Transcriptomics

Lesson Slides Hands-on Recordings Input dataset Workflows
Whole transcriptome analysis of Arabidopsis thaliana
miRNA plants stress tolerance

Editorial Board

This material is reviewed by our Editorial Board:

Deepti Varshney avatar Deepti Varshneyorcid logoSaskia Hiltemann avatar Saskia Hiltemann

Contributors

This material was contributed to by:

orcid logoAnna Syme avatar Anna Symeorcid logoCristina Martins Rodrigues avatar Cristina Martins RodriguesMehmet Tekman avatar Mehmet Tekmanorcid logoTom Brown avatar Tom Brownorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoSaskia Hiltemann avatar Saskia HiltemannDeepti Varshney avatar Deepti Varshneyorcid logoSabrina Zander avatar Sabrina Zanderorcid logoDominik Brilhaus avatar Dominik Brilhausorcid logoMartin Kuhl avatar Martin KuhlFabian Recktenwald avatar Fabian RecktenwaldEsteban Perez-Wohlfeil avatar Esteban Perez-Wohlfeilorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoKevin Frey avatar Kevin Freyorcid logoDelphine Lariviere avatar Delphine LariviereStella Eggels avatar Stella Eggels

Funding

These individuals or organisations provided funding support for the development of this resource

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MAdLand
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DataPLANT